Microbial Consortiums of Putative Degraders of Low-Density Polyethylene-Associated Compounds in the Ocean

Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface properties

(2021) Sonja Oberbeckmann et al.   ENVIRONMENTAL MICROBIOLOGY

Plasticizer Degradation by Marine Bacterial Isolates: A Proteogenomic and Metabolomic Characterization

(2020) Robyn J. Wright et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Ecology of the plastisphere

(2020) Linda A. Amaral-Zettler et al.   NATURE REVIEWS MICROBIOLOGY

Determination of the carbonyl index of polyethylene and polypropylene using specified area under band methodology with ATR-FTIR spectroscopy

(2020) Jasmine Almond et al.   E-POLYMERS

Fragmentation of plastic objects in a laboratory seawater microcosm

(2020) Jan Gerritse et al.   Scientific Reports

Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment

(2020) Maria Pinto et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial abundance, activity and population genomic profiling with mOTUs2

(2019) Alessio Milanese et al.   Nature Communications

Redox traits characterize the organization of global microbial communities

(2019) Salvador Ramírez-Flandes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine Microbial Assemblages on Microplastics: Diversity, Adaptation, and Role in Degradation

(2019) Sonja Oberbeckmann et al.   Annual Review of Marine Science

The composition of bacterial communities associated with plastic biofilms differs between different polymers and stages of biofilm succession

(2019) Maria Pinto et al.   PLoS One

Bacterial Candidates for Colonization and Degradation of Marine Plastic Debris

(2019) Line Roager et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biodegradation of mixture of plastic films by tailored marine consortia

(2019) Evdokia Syranidou et al.   JOURNAL OF HAZARDOUS MATERIALS

Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms

(2019) Katharina Kesy et al.   Frontiers in Microbiology

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

(2019) Pierre-Alain Chaumeil et al.   BIOINFORMATICS

The plastisphere in marine ecosystem hosts potential specific microbial degraders including Alcanivorax borkumensis as a key player for the low-density polyethylene degradation

(2019) Alice Delacuvellerie et al.   JOURNAL OF HAZARDOUS MATERIALS

Evidence for selective bacterial community structuring on microplastics

(2018) Martin Ogonowski et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence of niche partitioning among bacteria living on plastics, organic particles and surrounding seawaters

(2018) C. Dussud et al.   ENVIRONMENTAL POLLUTION

Ketobacter alkanivorans gen. nov., sp. nov., an n-alkane-degrading bacterium isolated from seawater

(2018) Seol-Hee Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Degradation of polyethylene microplastics in seawater: Insights into the environmental degradation of polymers

(2018) João P. Da Costa et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING

Microbial Degradation of UV-Pretreated Low-Density Polyethylene Films by Novel Polyethylene-Degrading Bacteria Isolated from Plastic-Dump Soil

(2018) Zahra Montazer et al.   JOURNAL OF POLYMERS AND THE ENVIRONMENT

Biodegradability of polyethylene by bacteria and fungi from Dandora dumpsite Nairobi-Kenya

(2018) Christabel Ndahebwa Muhonja et al.   PLoS One

Dissolved organic carbon leaching from plastics stimulates microbial activity in the ocean

(2018) Cristina Romera-Castillo et al.   Nature Communications

Environmental Factors Support the Formation of Specific Bacterial Assemblages on Microplastics

(2018) Sonja Oberbeckmann et al.   Frontiers in Microbiology

Colonization of Non-biodegradable and Biodegradable Plastics by Marine Microorganisms

(2018) Claire Dussud et al.   Frontiers in Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

(2018) Gherman V. Uritskiy et al.   Microbiome

Destabilization of polyethylene and polyvinylchloride structure by marine bacterial strain

(2018) Alka Kumari et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Investigation of biodegradation potentials of high density polyethylene degrading marine bacteria isolated from the coastal regions of Tamil Nadu, India

(2018) R. Sangeetha Devi et al.   MARINE POLLUTION BULLETIN

Plastics in the North Atlantic garbage patch: A boat-microbe for hitchhikers and plastic degraders

(2017) Didier Debroas et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Production, use, and fate of all plastics ever made

(2017) Roland Geyer et al.   Science Advances

Spatial and seasonal variation in diversity and structure of microbial biofilms on marine plastics in Northern European waters

(2017) Sonja Oberbeckmann et al.   FEMS MICROBIOLOGY ECOLOGY

Development of tailored indigenous marine consortia for the degradation of naturally weathered polyethylene films

(2017) Evdokia Syranidou et al.   PLoS One

Microbial diversity and hydrocarbon degrading gene capacity of a crude oil field soil as determined by metagenomics analysis

(2016) Firouz Abbasian et al.   BIOTECHNOLOGY PROGRESS

Dangerous hitchhikers? Evidence for potentially pathogenic Vibrio spp. on microplastic particles

(2016) Inga V. Kirstein et al.   MARINE ENVIRONMENTAL RESEARCH

Qualitative impact of salinity, UV radiation and turbulence on leaching of organic plastic additives from four common plastics — A lab experiment

(2016) Tim Jesper Suhrhoff et al.   MARINE POLLUTION BULLETIN

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific Gyre

(2016) Jessica A. Bryant et al.   mSystems

Microbes on a Bottle: Substrate, Season and Geography Influence Community Composition of Microbes Colonizing Marine Plastic Debris

(2016) Sonja Oberbeckmann et al.   PLoS One

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Marine microplastic-associated biofilms – a review

(2015) Sonja Oberbeckmann et al.   Environmental Chemistry

The biogeography of the Plastisphere: implications for policy

(2015) Linda A Amaral-Zettler et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Biodiversity and degradation potential of oil-degrading bacteria isolated from deep-sea sediments of South Mid-Atlantic Ridge

(2015) Xiangxing Gao et al.   MARINE POLLUTION BULLETIN

Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments

(2015) Lilian M. Guibert et al.   MICROBIAL ECOLOGY

Plastic waste inputs from land into the ocean

(2015) J. R. Jambeck et al.   SCIENCE

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Rapid bacterial colonization of low-density polyethylene microplastics in coastal sediment microcosms

(2014) Jesse P Harrison et al.   BMC MICROBIOLOGY

Cloning and expression of three ladA-type alkane monooxygenase genes from an extremely thermophilic alkane-degrading bacterium Geobacillus thermoleovorans B23

(2014) Chanita Boonmak et al.   EXTREMOPHILES

Microbial degradation and deterioration of polyethylene – A review

(2014) Juan-Manuel Restrepo-Flórez et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Plastic debris in the open ocean

(2014) A. Cozar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The long-chain alkane metabolism network of Alcanivorax dieselolei

(2014) Wanpeng Wang et al.   Nature Communications

Diverse alkane hydroxylase genes in microorganisms and environments

(2014) Yong Nie et al.   Scientific Reports

An approach to low-density polyethylene biodegradation by Bacillus amyloliquefaciens

(2014) Merina Paul Das et al.   3 Biotech

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Life in the “Plastisphere”: Microbial Communities on Plastic Marine Debris

(2013) Erik R. Zettler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biodegradation of low-density polyethylene by marine bacteria from pelagic waters, Arabian Sea, India

(2013) Kumar Harshvardhan et al.   MARINE POLLUTION BULLETIN

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Enzymes and genes involved in aerobic alkane degradation

(2013) Wanpeng Wang et al.   Frontiers in Microbiology

Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1T)

(2012) David Schleheck et al.   Standards in Genomic Sciences

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

(2011) Joel E. Kostka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean

(2010) Liping Wang et al.   ENVIRONMENTAL MICROBIOLOGY

The role of cytochrome P450 monooxygenases in microbial fatty acid metabolism

(2010) Inge N. A. Van Bogaert et al.   FEBS Journal

Parvibaculum indicum sp. nov., isolated from deep-sea water

(2010) Q. Lai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Glutathione transferases in bacteria

(2008) Nerino Allocati et al.   FEBS Journal

Marine microbe-mediated biodegradation of low- and high-density polyethylenes

(2008) M. Sudhakar et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Tranquillimonas alkanivorans gen. nov., sp. nov., an alkane-degrading bacterium isolated from Semarang Port in Indonesia

(2008) T. U. Harwati et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY