Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

Longitudinal evaluation of fecal microbiota transplantation for ameliorating calf diarrhea and improving growth performance

(2021) Hyun Sik Kim et al.   Nature Communications

The role of short-chain fatty acids in intestinal barrier function, inflammation, oxidative stress, and colonic carcinogenesis

(2021) Pinyi Liu et al.   PHARMACOLOGICAL RESEARCH

Calf Diarrhea Caused by Prolonged Expansion of Autochthonous Gut Enterobacteriaceae and Their Lytic Bacteriophages

(2021) Tae Woong Whon et al.   mSystems

The Serum Proteome and Ursodeoxycholic Acid Response in Primary Biliary Cholangitis

(2021) Ben Barron‐Millar et al.   HEPATOLOGY

Blockage of bacterial FimH prevents mucosal inflammation associated with Crohn’s disease

(2021) Grégoire Chevalier et al.   Microbiome

Detection of CTX-M-15 Extended-Spectrum β-Lactamases Producing Escherichia coli Isolates from Colostrum and Faeces of Newborn Dairy Calves in China

(2021) Zhiyuan He et al.   Pathogens

Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation

(2020) Sidhartha R. Sinha et al.   Cell Host & Microbe

Bile Acids Signal via TGR5 to Activate Intestinal Stem Cells and Epithelial Regeneration

(2020) Giovanni Sorrentino et al.   GASTROENTEROLOGY

Ursodeoxycholic Acid (UDCA) Mitigates the Host Inflammatory Response during Clostridioides difficile Infection by Altering Gut Bile Acids

(2020) Jenessa A. Winston et al.   INFECTION AND IMMUNITY

The Controversial Role of Human Gut Lachnospiraceae

(2020) Mirco Vacca et al.   Microorganisms

Bile acids drive the newborn’s gut microbiota maturation

(2020) N. van Best et al.   Nature Communications

Allomyrina dichotoma larval extract attenuates intestinal barrier disruption by altering inflammatory response and tight junction proteins in lipopolysaccharide-induced Caco-2 cells

(2020) Kyong Kim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Impact of Gallic Acid on Gut Health: Focus on the Gut Microbiome, Immune Response, and Mechanisms of Action

(2020) Kang Yang et al.   Frontiers in Immunology

Primary biliary cholangitis

(2020) Ana Lleo et al.   LANCET

An Historical Review of Phenylacetic Acid

(2019) Sam D Cook   PLANT AND CELL PHYSIOLOGY

Effect of butyrate on passive transfer of immunity in dairy calves

(2019) R.L. Hiltz et al.   JOURNAL OF DAIRY SCIENCE

Inflammation and Inflammatory Cytokine Contribute to the Initiation and Development of Ulcerative Colitis and Its Associated Cancer

(2019) Dianbo Yao et al.   INFLAMMATORY BOWEL DISEASES

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Saccharomyces cerevisiae boulardii CNCM I-1079 affects health, growth, and fecal microbiota in milk-fed veal calves

(2019) C. Villot et al.   JOURNAL OF DAIRY SCIENCE

Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut

(2019) Erik Bakkeren et al.   NATURE

Differences in Gut Microbiota in Patients With vs Without Inflammatory Bowel Diseases: A Systematic Review

(2019) Rapat Pittayanon et al.   GASTROENTEROLOGY

Faecalibacterium prausnitzii Produces Butyrate to Maintain Th17/Treg Balance and to Ameliorate Colorectal Colitis by Inhibiting Histone Deacetylase 1

(2018) Lixing Zhou et al.   INFLAMMATORY BOWEL DISEASES

Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages

(2018) Smitha Krishnan et al.   Cell Reports

Bile Acids Activated Receptors Regulate Innate Immunity

(2018) Stefano Fiorucci et al.   Frontiers in Immunology

A Microbiota-Derived Bacteriocin Targets the Host to Confer Diarrhea Resistance in Early-Weaned Piglets

(2018) Jun Hu et al.   Cell Host & Microbe

Effect of fecal microbiota transplantation route of administration on gut colonization and host response in preterm pigs

(2018) Anders Brunse et al.   ISME Journal

The Bile Acid Receptor GPBAR1 Regulates the M1/M2 Phenotype of Intestinal Macrophages and Activation of GPBAR1 Rescues Mice from Murine Colitis

(2017) Michele Biagioli et al.   JOURNAL OF IMMUNOLOGY

Multidonor intensive faecal microbiota transplantation for active ulcerative colitis: a randomised placebo-controlled trial

(2017) Sudarshan Paramsothy et al.   LANCET

Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates

(2017) Bryan K. Cole et al.   PLoS One

Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation

(2017) Kimberly A. Dill-McFarland et al.   Scientific Reports

Ursodeoxycholic Acid Inhibits Clostridium difficile Spore Germination and Vegetative Growth, and Prevents the Recurrence of Ileal Pouchitis Associated With the Infection

(2016) Alexa R. Weingarden et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Changes in the intestinal bacterial community, short-chain fatty acid profile, and intestinal development of preweaned Holstein calves. 2. Effects of gastrointestinal site and age 1

(2016) J.J. Castro et al.   JOURNAL OF DAIRY SCIENCE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Primary Sclerosing Cholangitis

(2016) Konstantinos N. Lazaridis et al.   NEW ENGLAND JOURNAL OF MEDICINE

Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh

(2016) Shafiqul Alam Sarker et al.   EBioMedicine

Primary biliary cirrhosis

(2015) Elizabeth J Carey et al.   LANCET

A biosynthetic pathway for a prominent class of microbiota-derived bile acids

(2015) A Sloan Devlin et al.   Nature Chemical Biology

Bile Acid-Activated Receptors, Intestinal Microbiota, and the Treatment of Metabolic Disorders

(2015) Stefano Fiorucci et al.   TRENDS IN MOLECULAR MEDICINE

Assessment of Adhesins as an Indicator of Pathovar-Associated Virulence Factors in Bovine Escherichia coli

(2014) Charlotte Valat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Commensal Bacterium Faecalibacterium prausnitzii Is Protective in DNBS-induced Chronic Moderate and Severe Colitis Models

(2014) Rebeca Martín et al.   INFLAMMATORY BOWEL DISEASES

An overview of calf diarrhea - infectious etiology, diagnosis, and intervention

(2014) Yong-il Cho et al.   Journal of Veterinary Science

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

(2014) Charlie G. Buffie et al.   NATURE

Gut microbiota–generated metabolites in animal health and disease

(2014) Won-Jae Lee et al.   Nature Chemical Biology

Life at the beginning: perturbation of the microbiota by antibiotics in early life and its role in health and disease

(2014) Sebastian Zeissig et al.   NATURE IMMUNOLOGY

Therapeutic uses of animal biles in traditional Chinese medicine: An ethnopharmacological, biophysical chemical and medicinal review

(2014) David Q-H Wang   WORLD JOURNAL OF GASTROENTEROLOGY

Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium difficile infection

(2013) Alexa R. Weingarden et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Therapeutic Potential of Fecal Microbiota Transplantation

(2013) Loek P. Smits et al.   GASTROENTEROLOGY

Contribution of the 7β-hydroxysteroid dehydrogenase fromRuminococcus gnavusN53 to ursodeoxycholic acid formation in the human colon

(2013) Ja-Young Lee et al.   JOURNAL OF LIPID RESEARCH

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbiota-Targeted Therapies: An Ecological Perspective

(2012) K. P. Lemon et al.   Science Translational Medicine

Bile acids in the colon, from healthy to cytotoxic molecules

(2012) Juan I. Barrasa et al.   TOXICOLOGY IN VITRO

Role of the Commensal Microbiota in Normal and Pathogenic Host Immune Responses

(2011) Dan R. Littman et al.   Cell Host & Microbe

Update on the Pharmacokinetics and Redox Properties of Protein-Bound Uremic Toxins

(2011) Hiroshi Watanabe et al.   JOURNAL OF PHARMACEUTICAL SCIENCES

Fecal microbiota transplantation and emerging applications

(2011) Thomas J. Borody et al.   Nature Reviews Gastroenterology & Hepatology

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Identification, cloning, heterologous expression, and characterization of a NADPH-dependent 7β-hydroxysteroid dehydrogenase from Collinsella aerofaciens

(2010) Luo Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Enteroaggregative Escherichia coli Disrupts Epithelial Cell Tight Junctions

(2010) M. C. Strauman et al.   INFECTION AND IMMUNITY

Probiotics and the gut microbiota in intestinal health and disease

(2010) Mélanie G. Gareau et al.   Nature Reviews Gastroenterology & Hepatology

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

(2009) Petra Louis et al.   FEMS MICROBIOLOGY LETTERS

Role of TNF receptors, TNFR1 and TNFR2, in dextran sodium sulfate-induced colitis

(2009) RoseMarie Stillie et al.   INFLAMMATORY BOWEL DISEASES

Low counts of Faecalibacterium prausnitzii in colitis microbiota

(2009) H. Sokol et al.   INFLAMMATORY BOWEL DISEASES

The Bile Acid Receptor FXR Is a Modulator of Intestinal Innate Immunity

(2009) P. Vavassori et al.   JOURNAL OF IMMUNOLOGY

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome

(2008) B. V. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA