Longitudinal evaluation of fecal microbiota transplantation for ameliorating calf diarrhea and improving growth performance

Improving Risk–Benefit in Faecal Transplantation through Microbiome Screening

(2020) Lito E. Papanicolas et al.   TRENDS IN MICROBIOLOGY

Multi-Compartment Profiling of Bacterial and Host Metabolites Identifies Intestinal Dysbiosis and Its Functional Consequences in the Critically Ill Child

(2019) Anisha Wijeyesekera et al.   CRITICAL CARE MEDICINE

Microbial genes and pathways in inflammatory bowel disease

(2019) Melanie Schirmer et al.   NATURE REVIEWS MICROBIOLOGY

Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle

(2019) Fuyong Li et al.   Microbiome

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Ecological Restoration of Antibiotic-Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows

(2018) Shoukun Ji et al.   Frontiers in Cellular and Infection Microbiology

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn’s disease

(2018) Gavin M. Douglas et al.   Microbiome

A Microbiota-Derived Bacteriocin Targets the Host to Confer Diarrhea Resistance in Early-Weaned Piglets

(2018) Jun Hu et al.   Cell Host & Microbe

Effect of fecal microbiota transplantation route of administration on gut colonization and host response in preterm pigs

(2018) Anders Brunse et al.   ISME Journal

Antimicrobial growth promoter use in livestock: a requirement to understand their modes of action to develop effective alternatives

(2017) Kirsty Brown et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation

(2017) Susana Fuentes et al.   ISME Journal

P478 The current place of probiotics in treatment of pouchitis: systematic review

(2017) L. Lichtenstein et al.   Journal of Crohns & Colitis

Multidonor intensive faecal microbiota transplantation for active ulcerative colitis: a randomised placebo-controlled trial

(2017) Sudarshan Paramsothy et al.   LANCET

A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites

(2017) Dylan Dodd et al.   NATURE

Dysbiosis and Its Discontents

(2017) Katarzyna B. Hooks et al.   mBio

Dietary Protein and Amino Acid Supplementation in Inflammatory Bowel Disease Course: What Impact on the Colonic Mucosa?

(2017) Sandra Vidal-Lletjós et al.   Nutrients

Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella

(2016) Fabian Rivera-Chávez et al.   Cell Host & Microbe

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

(2016) Sheerli Kruger Ben Shabat et al.   ISME Journal

Development of a novel detection system for microbes from bovine diarrhea by real-time PCR

(2016) Shinobu TSUCHIAKA et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

Diet–microbiota interactions as moderators of human metabolism

(2016) Justin L. Sonnenburg et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

Proteobacteria: microbial signature of dysbiosis in gut microbiota

(2015) Na-Ri Shin et al.   TRENDS IN BIOTECHNOLOGY

Emerging insights on intestinal dysbiosis during bacterial infections

(2014) Tu Anh N Pham et al.   CURRENT OPINION IN MICROBIOLOGY

Rumen transfaunation

(2014) E.J. DePeters et al.   IMMUNOLOGY LETTERS

Gut microbiota–generated metabolites in animal health and disease

(2014) Won-Jae Lee et al.   Nature Chemical Biology

Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non-C. difficile-Associated Diarrhea from Healthy Controls

(2014) A. M. Schubert et al.   mBio

Therapeutic Potential of Fecal Microbiota Transplantation

(2013) Loek P. Smits et al.   GASTROENTEROLOGY

Antibiotic resistance—the need for global solutions

(2013) Ramanan Laxminarayan et al.   LANCET INFECTIOUS DISEASES

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Targeting the Microbiota to Address Diet-Induced Obesity: A Time Dependent Challenge

(2013) Siobhan F. Clarke et al.   PLoS One

A call for antibiotic alternatives research

(2013) Thaddeus B. Stanton   TRENDS IN MICROBIOLOGY

Treatment, promotion, commotion: antibiotic alternatives in food-producing animals

(2013) Heather K. Allen et al.   TRENDS IN MICROBIOLOGY

The Gut Microbiome Modulates Colon Tumorigenesis

(2013) J. P. Zackular et al.   mBio

Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

(2012) Omry Koren et al.   CELL

Antibiotics in early life alter the murine colonic microbiome and adiposity

(2012) Ilseung Cho et al.   NATURE

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity

(2012) Jorge Henao-Mejia et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbiota-Targeted Therapies: An Ecological Perspective

(2012) K. P. Lemon et al.   Science Translational Medicine

Antibiotics, microbiota, and immune defense

(2012) Carles Ubeda et al.   TRENDS IN IMMUNOLOGY

Effect of Breast and Formula Feeding on Gut Microbiota Shaping in Newborns

(2012) Federica Guaraldi et al.   Frontiers in Cellular and Infection Microbiology

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

(2012) Nicola Segata et al.   GENOME BIOLOGY

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Fecal microbiota transplantation and emerging applications

(2011) Thomas J. Borody et al.   Nature Reviews Gastroenterology & Hepatology

The Intestinal Microbiota Plays a Role in Salmonella-Induced Colitis Independent of Pathogen Colonization

(2011) Rosana B. R. Ferreira et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Probiotics and the gut microbiota in intestinal health and disease

(2010) Mélanie G. Gareau et al.   Nature Reviews Gastroenterology & Hepatology

Prevalence, prediction and risk factors of enteropathogens in normal and non-normal faeces of young Dutch dairy calves

(2009) Chris J.M. Bartels et al.   PREVENTIVE VETERINARY MEDICINE

Disease Management of Dairy Calves and Heifers

(2008) Sheila M. McGuirk   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE