Gut microbiota analysis of Blenniidae fishes including an algae-eating fish and clear boundary formation among isolated Vibrio strains

The quorum sensing regulator OpaR is a repressor of polar flagellum genes in Vibrio parahaemolyticus

(2021) Renfei Lu et al.   JOURNAL OF MICROBIOLOGY

Characteristics and complete genome sequence of the virulent Vibrio alginolyticus phage VAP7, isolated in Hainan, China

(2020) Mingming Gao et al.   ARCHIVES OF VIROLOGY

Feed, Microbiota, and Gut Immunity: Using the Zebrafish Model to Understand Fish Health

(2020) Adrià López Nadal et al.   Frontiers in Immunology

Puffer Fish Gut Microbiota Studies Revealed Unique Bacterial Co-Occurrence Patterns and New Insights on Tetrodotoxin Producers

(2020) Zhenchi Li et al.   Marine Drugs

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

(2020) Kishwar Shafin et al.   NATURE BIOTECHNOLOGY

Structure and membership of gut microbial communities in multiple fish cryptic species under potential migratory effects

(2020) My Hanh Le et al.   Scientific Reports

Osmotic stress induces gut microbiota community shift in fish

(2020) Keng Po Lai et al.   ENVIRONMENTAL MICROBIOLOGY

Recent progress on engineering microbial alginate lyases towards their versatile role in biotechnological applications

(2020) Shivakumar Renuka Dharani et al.   FOLIA MICROBIOLOGICA

High-throughput sequencing of the 16S rRNA gene to analyze the gut microbiome in juvenile and adult tropical gar (Atractosteus tropicus)

(2020) Roberto Méndez-Pérez et al.   Latin American Journal of Aquatic Research

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Sex, Age, and Bacteria: How the Intestinal Microbiota Is Modulated in a Protandrous Hermaphrodite Fish

(2019) M. Carla Piazzon et al.   Frontiers in Microbiology

Biosynthesis and applications of prenylquinones

(2018) Makoto Kawamukai   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Fish Gut Microbiome: Current Approaches and Future Perspectives

(2018) Chandni Talwar et al.   INDIAN JOURNAL OF MICROBIOLOGY

Experimental bacterial adaptation to the zebrafish gut reveals a primary role for immigration

(2018) Catherine D. Robinson et al.   PLOS BIOLOGY

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Complete genome sequence of Vibrio alginolyticus ATCC 33787 T isolated from seawater with three native megaplasmids

(2016) Pengxia Wang et al.   Marine Genomics

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

A new view of the fish gut microbiome: Advances from next-generation sequencing

(2015) Mahdi Ghanbari et al.   AQUACULTURE

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

(2015) Martin S Llewellyn et al.   ISME Journal

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Microbial population dynamics in the faeces of wood-eating loricariid catfishes

(2013) N. Di Maiuta et al.   LETTERS IN APPLIED MICROBIOLOGY

Enzyme-producing bacteria isolated from fish gut: a review

(2012) A.K. Ray et al.   AQUACULTURE NUTRITION

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

(2012) Shangong Wu et al.   PLoS One

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)

(2011) Maartje AHJ van Kessel et al.   AMB Express

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

Improving Bioscience Research Reporting: The ARRIVE Guidelines for Reporting Animal Research

(2010) Carol Kilkenny et al.   PLOS BIOLOGY

Genetic Determinants of Self Identity and Social Recognition in Bacteria

(2008) K. A. Gibbs et al.   SCIENCE