Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers
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Title
Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers
Authors
Keywords
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Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-05-18
DOI
10.1038/s41467-022-30233-7
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Note: Only part of the references are listed.- Accurate and efficient detection of gene fusions from RNA sequencing data
- (2021) Sebastian Uhrig et al. GENOME RESEARCH
- Method comparison studies of telomere length measurement using qPCR approaches: A critical appraisal of the literature
- (2021) Alyssa R. Lindrose et al. PLoS One
- Sarcoma classification by DNA methylation profiling
- (2021) Christian Koelsche et al. Nature Communications
- Genome Sequencing as an Alternative to Cytogenetic Analysis in Myeloid Cancers
- (2021) Eric J. Duncavage et al. NEW ENGLAND JOURNAL OF MEDICINE
- Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome
- (2021) Sabine A. Hartlieb et al. Nature Communications
- Twelve years of SAMtools and BCFtools
- (2021) Petr Danecek et al. GigaScience
- Clinical validation of Whole Genome Sequencing for cancer diagnostics
- (2021) Paul Roepman et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Clinical cancer genomic profiling
- (2021) Debyani Chakravarty et al. NATURE REVIEWS GENETICS
- Multimodal analysis of cell-free DNA whole-genome sequencing for pediatric cancers with low mutational burden
- (2021) Peter Peneder et al. Nature Communications
- Genomes for Kids: The scope of pathogenic mutations in pediatric cancer revealed by comprehensive DNA and RNA sequencing
- (2021) Scott Newman et al. Cancer Discovery
- Comprehensive Genomic and Transcriptomic Analysis for Guiding Therapeutic Decisions in Patients with Rare Cancers
- (2021) Peter Horak et al. Cancer Discovery
- The repertoire of mutational signatures in human cancer
- (2020) Ludmil B. Alexandrov et al. NATURE
- Genomic footprints of activated telomere maintenance mechanisms in cancer
- (2020) Lina Sieverling et al. Nature Communications
- Telomere maintenance mechanisms define clinical outcome in high-risk neuroblastoma
- (2020) Balakrishna Koneru et al. CANCER RESEARCH
- The mutational constraint spectrum quantified from variation in 141,456 humans
- (2020) Konrad J. Karczewski et al. NATURE
- Accelerated single cell seeding in relapsed multiple myeloma
- (2020) Heather J. Landau et al. Nature Communications
- Association of tumour mutational burden with outcomes in patients with advanced solid tumours treated with pembrolizumab: prospective biomarker analysis of the multicohort, open-label, phase 2 KEYNOTE-158 study
- (2020) Aurélien Marabelle et al. LANCET ONCOLOGY
- Whole genome, transcriptome and methylome profiling enhances actionable target discovery in high-risk pediatric cancer
- (2020) Marie Wong et al. NATURE MEDICINE
- Isabl Platform, a digital biobank for processing multimodal patient data
- (2020) Juan S. Medina-Martínez et al. BMC BIOINFORMATICS
- Rhabdomyosarcoma
- (2019) Stephen X. Skapek et al. Nature Reviews Disease Primers
- NUTM1-rearranged neoplasia: a multi-institution experience yields novel fusion partners and expands the histologic spectrum
- (2019) Todd M. Stevens et al. MODERN PATHOLOGY
- Alternative lengthening of telomeres (ALT) influences survival in soft tissue sarcomas: a systematic review with meta-analysis
- (2019) Rita T. Lawlor et al. BMC CANCER
- Recurrent KBTBD4 small in-frame insertions and absence of DROSHA deletion or DICER1 mutation differentiate pineal parenchymal tumor of intermediate differentiation (PPTID) from pineoblastoma
- (2019) Julieann C. Lee et al. ACTA NEUROPATHOLOGICA
- A Compendium of Mutational Signatures of Environmental Agents
- (2019) Jill E. Kucab et al. CELL
- High yield of RNA sequencing for targetable kinase fusions in lung adenocarcinomas with no driver alteration detected by DNA sequencing and low tumor mutation burden
- (2019) Ryma Benayed et al. CLINICAL CANCER RESEARCH
- Circulating cell-free tumor DNA analysis in pediatric cancers
- (2019) Daniel Andersson et al. MOLECULAR ASPECTS OF MEDICINE
- Integrated genomic profiling expands clinical options for patients with cancer
- (2019) Nike Beaubier et al. NATURE BIOTECHNOLOGY
- The Global Landscape of EBV-Associated Tumors
- (2019) Claire Shannon-Lowe et al. Frontiers in Oncology
- The mutational footprints of cancer therapies
- (2019) Oriol Pich et al. NATURE GENETICS
- Genome Sequencing during a Patient’s Journey through Cancer
- (2019) Jyoti Nangalia et al. NEW ENGLAND JOURNAL OF MEDICINE
- Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project
- (2018) Pauline Robbe et al. GENETICS IN MEDICINE
- SvABA: genome-wide detection of structural variants and indels by local assembly
- (2018) Jeremiah A. Wala et al. GENOME RESEARCH
- The landscape of genomic alterations across childhood cancers
- (2018) Susanne N. Gröbner et al. NATURE
- DNA methylation-based classification of central nervous system tumours
- (2018) David Capper et al. NATURE
- Genome doubling shapes the evolution and prognosis of advanced cancers
- (2018) Craig M. Bielski et al. NATURE GENETICS
- Strelka2: fast and accurate calling of germline and somatic variants
- (2018) Sangtae Kim et al. NATURE METHODS
- Efficacy of Larotrectinib in TRK Fusion–Positive Cancers in Adults and Children
- (2018) Alexander Drilon et al. NEW ENGLAND JOURNAL OF MEDICINE
- Value-based genomics
- (2018) Jun Gong et al. Oncotarget
- MutationalPatterns: comprehensive genome-wide analysis of mutational processes
- (2018) Francis Blokzijl et al. Genome Medicine
- Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors
- (2018) Kazimierz O. Wrzeszczynski et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome
- (2018) Michael Rusch et al. Nature Communications
- A fast detection of fusion genes from paired-end RNA-seq data
- (2018) Trung Nghia Vu et al. BMC GENOMICS
- Integrating somatic variant data and biomarkers for germline variant classification in cancer predisposition genes
- (2018) Michael F. Walsh et al. HUMAN MUTATION
- A mechanistic classification of clinical phenotypes in neuroblastoma
- (2018) Sandra Ackermann et al. SCIENCE
- GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
- (2017) Daniel L. Cameron et al. GENOME RESEARCH
- Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
- (2017) Ahmet Zehir et al. NATURE MEDICINE
- HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures
- (2017) Helen Davies et al. NATURE MEDICINE
- Conpair: concordance and contamination estimator for matched tumor–normal pairs
- (2016) Ewa A. Bergmann et al. BIOINFORMATICS
- The genomic landscape of schwannoma
- (2016) Sameer Agnihotri et al. NATURE GENETICS
- An oncogenic MYB feedback loop drives alternate cell fates in adenoid cystic carcinoma
- (2016) Yotam Drier et al. NATURE GENETICS
- FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing
- (2016) Ronglai Shen et al. NUCLEIC ACIDS RESEARCH
- COSMIC: somatic cancer genetics at high-resolution
- (2016) Simon A. Forbes et al. NUCLEIC ACIDS RESEARCH
- Diagnostic Yield of Clinical Tumor and Germline Whole-Exome Sequencing for Children With Solid Tumors
- (2016) D. Williams Parsons et al. JAMA Oncology
- Mutations in the SIX1/2 Pathway and the DROSHA/DGCR8 miRNA Microprocessor Complex Underlie High-Risk Blastemal Type Wilms Tumors
- (2015) Jenny Wegert et al. CANCER CELL
- Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology
- (2015) Sue Richards et al. GENETICS IN MEDICINE
- Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT)
- (2015) Donavan T. Cheng et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- TERT rearrangements are frequent in neuroblastoma and identify aggressive tumors
- (2015) Linda J Valentijn et al. NATURE GENETICS
- ClinVar: public archive of interpretations of clinically relevant variants
- (2015) Melissa J. Landrum et al. NUCLEIC ACIDS RESEARCH
- Intratumoral diversity of telomere length in individual neuroblastoma tumors
- (2015) Annalisa Pezzolo et al. Oncotarget
- p53 as a target for the treatment of cancer
- (2014) Michael J. Duffy et al. CANCER TREATMENT REVIEWS
- Integrated Genomic Characterization of Papillary Thyroid Carcinoma
- (2014) Nishant Agrawal et al. CELL
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- (2014) Zhihao Ding et al. NUCLEIC ACIDS RESEARCH
- Detection of Circulating Tumor DNA in Early- and Late-Stage Human Malignancies
- (2014) C. Bettegowda et al. Science Translational Medicine
- Recurrent Somatic Structural Variations Contribute to Tumorigenesis in Pediatric Osteosarcoma
- (2014) Xiang Chen et al. Cell Reports
- MSIsensor: microsatellite instability detection using paired tumor-normal sequence data
- (2013) Beifang Niu et al. BIOINFORMATICS
- Mutational heterogeneity in cancer and the search for new cancer-associated genes
- (2013) Michael S. Lawrence et al. NATURE
- Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing
- (2013) Garrett M Frampton et al. NATURE BIOTECHNOLOGY
- Molecular and Clinicopathological Analysis of Epstein-Barr Virus-Associated Posttransplant Smooth Muscle Tumors
- (2012) D. Jonigk et al. AMERICAN JOURNAL OF TRANSPLANTATION
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- The Life History of 21 Breast Cancers
- (2012) Serena Nik-Zainal et al. CELL
- Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing
- (2012) Marco Gerlinger et al. NEW ENGLAND JOURNAL OF MEDICINE
- Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development
- (2011) Philip J. Stephens et al. CELL
- Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
- (2009) K. Ye et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
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