Bait input altered microbial community structure and increased greenhouse gases production in coastal wetland sediment

Long-Term Fertilization Alters Nitrous Oxide Cycling Dynamics in Salt Marsh Sediments

(2021) Xuefeng Peng et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Sediment microbiota in polyculture of shrimp and fish pattern is distinctive from those in monoculture intensive shrimp or fish ponds

(2021) Shenzheng Zeng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Response of sediment bacterial communities to the drainage of wastewater from aquaculture ponds in different seasons

(2020) Xiaoxiao Shen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Ebullition was a major pathway of methane emissions from the aquaculture ponds in southeast China

(2020) Ping Yang et al.   WATER RESEARCH

Rapid growth in greenhouse gas emissions from the adoption of industrial-scale aquaculture

(2019) Junji Yuan et al.   Nature Climate Change

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Model-based evaluation of an integrated high-rate activated sludge and mainstream anammox system

(2019) Mingsheng Jia et al.   CHEMICAL ENGINEERING JOURNAL

Soil GHG fluxes are altered by N deposition: New data indicate lower N stimulation of the N 2 O flux and greater stimulation of the calculated C pools

(2019) Lei Deng et al.   GLOBAL CHANGE BIOLOGY

Anaerobic oxidation of methane in paddy soil: Role of electron acceptors and fertilization in mitigating CH4 fluxes

(2019) Lichao Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

OUP accepted manuscript

(2018)   BIOINFORMATICS

The trends of aquacultural nitrogen budget and its environmental implications in China

(2018) Zhibo Luo et al.   Scientific Reports

Reclamation culture alters sediment phosphorus speciation and ecological risk in coastal zone of Southeastern China

(2018) Dengzhou Gao et al.   CLEAN-Soil Air Water

Vertical Variations in Bacterial Community Composition and Environmental Factors in the Culture Pond Sediment of Sea Cucumber Apostichopus Japonicus

(2018) Xinfang Lv et al.   JOURNAL OF COASTAL RESEARCH

Grazing-induced microbiome alterations drive soil organic carbon turnover and productivity in meadow steppe

(2018) Weibing Xun et al.   Microbiome

The global distribution and trajectory of tidal flats

(2018) Nicholas J. Murray et al.   NATURE

Hydroperiod, soil moisture and bioturbation are critical drivers of greenhouse gas fluxes and vary as a function of landuse change in mangroves of Sulawesi, Indonesia

(2018) Clint Cameron et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Dynamics of dissolved nutrients in the aquaculture shrimp ponds of the Min River estuary, China: Concentrations, fluxes and environmental loads

(2017) Ping Yang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Composition, diversity and function of intestinal microbiota in pacific white shrimp (Litopenaeus vannamei) at different culture stages

(2017) Shenzheng Zeng et al.   PeerJ

Nitrogen Losses in Sediments of the East China Sea: Spatiotemporal Variations, Controlling Factors, and Environmental Implications

(2017) Xianbiao Lin et al.   Journal of Geophysical Research-Biogeosciences

Dynamic changes of microbial communities in Litopenaeus vannamei cultures and the effects of environmental factors

(2016) Hao Zhang et al.   AQUACULTURE

Carbon dioxide and methane fluxes from feeding and no-feeding mariculture ponds

(2016) Yan Chen et al.   ENVIRONMENTAL POLLUTION

Microbial nitrogen processing in hard clam (Mercenaria mercenaria) aquaculture sediments: the relative importance of denitrification and dissimilatory nitrate reduction to ammonium (DNRA)

(2016) Anna E. Murphy et al.   LIMNOLOGY AND OCEANOGRAPHY

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Nitrogen fertilization directly affects soil bacterial diversity and indirectly affects bacterial community composition

(2016) Jun Zeng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Who made the world's largest green tide in China?-an integrated study on the initiation and early development of the green tide in Yellow Sea

(2015) Zongling Wang et al.   LIMNOLOGY AND OCEANOGRAPHY

Antibiotics, Antibiotic Resistance Genes, and Bacterial Community Composition in Fresh Water Aquaculture Environment in China

(2015) Wenguang Xiong et al.   MICROBIAL ECOLOGY

Rates and drivers of mangrove deforestation in Southeast Asia, 2000–2012

(2015) Daniel R. Richards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary history influences the salinity preference of bacterial taxa in wetland soils

(2015) Ember M. Morrissey et al.   Frontiers in Microbiology

Mariculture pond influence on mangrove areas in south China: Significantly larger nitrogen and phosphorus loadings from sediment wash-out than from tidal water exchange

(2014) Hao Wu et al.   AQUACULTURE

Characterization of the intestinal microbiota in Pacific white shrimp, Litopenaeus vannamei, fed diets with different lipid sources

(2014) Meiling Zhang et al.   AQUACULTURE

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Successful application of nitritation/anammox to wastewater with elevated organic carbon to ammonia ratios

(2013) Sarina Jenni et al.   WATER RESEARCH

Anaerobic Oxidization of Methane in a Minerotrophic Peatland: Enrichment of Nitrite-Dependent Methane-Oxidizing Bacteria

(2012) Baoli Zhu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

(2012) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The impact of copper, nitrate and carbon status on the emission of nitrous oxide by two species of bacteria with biochemically distinct denitrification pathways

(2012) Heather Felgate et al.   ENVIRONMENTAL MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Life Cycle Assessment of Chinese Shrimp Farming Systems Targeted for Export and Domestic Sales

(2011) Ling Cao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

The Ecology, Biology and Pathogenesis of Acinetobacter spp.: An Overview

(2011) Hamuel James Doughari et al.   MICROBES AND ENVIRONMENTS

Microbial Nitrogen Cycling Processes in Oxygen Minimum Zones

(2010) Phyllis Lam et al.   Annual Review of Marine Science

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems

(2010) Kelly S. Ramirez et al.   ECOLOGY

Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests

(2010) Daniela F. Cusack et al.   ECOLOGY

Sulfide Inhibition of Nitrate Removal in Coastal Sediments

(2010) C. Marjorie Aelion et al.   Estuaries and Coasts

Rates and regulation of anaerobic ammonium oxidation and denitrification in the Black Sea

(2010) Marlene M. Jensen et al.   LIMNOLOGY AND OCEANOGRAPHY

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA