Prevalent association with the bacterial cell envelope of prokaryotic expansins revealed by bioinformatics analysis

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

(2021) David Sehnal et al.   NUCLEIC ACIDS RESEARCH

Global cellulose biomass, horizontal gene transfers and domain fusions drive microbial expansin evolution

(2020) William R. Chase et al.   NEW PHYTOLOGIST

Improved protein structure prediction using predicted interresidue orientations

(2020) Jianyi Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Urbanisation alters ecological interactions: Ant mutualists increase and specialist insect predators decrease on an urban gradient

(2020) Elise A. Rocha et al.   Scientific Reports

Expansin-like Exl1 from Pectobacterium is a virulence factor required for host infection, and induces a defence plant response involving ROS, and jasmonate, ethylene and salicylic acid signalling pathways in Arabidopsis thaliana

(2020) Delia A. Narváez-Barragán et al.   Scientific Reports

Expansin Engineering Database: A navigation and classification tool for expansins and homologues

(2020) Caroline Lohoff et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

A comprehensive in silico analysis of sortase superfamily

(2019) Adeel Malik et al.   JOURNAL OF MICROBIOLOGY

An expansin-like protein expands forage cell walls and synergistically increases hydrolysis, digestibility and fermentation of livestock feeds by fibrolytic enzymes

(2019) Andres A. Pech-Cervantes et al.   PLoS One

Frankia soli sp. nov., an actinobacterium isolated from soil beneath Ceanothus jepsonii

(2019) Maher Gtari et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding

(2018) Bálint Mészáros et al.   NUCLEIC ACIDS RESEARCH

Type IX secretion: the generation of bacterial cell surface coatings involved in virulence, gliding motility and the degradation of complex biopolymers

(2017) Paul D. Veith et al.   MOLECULAR MICROBIOLOGY

Plant-like bacterial expansins play contrasting roles in two tomato vascular pathogens

(2017) Matthew A. Tancos et al.   MOLECULAR PLANT PATHOLOGY

IPC – Isoelectric Point Calculator

(2016) Lukasz P. Kozlowski   Biology Direct

Cellulosomal expansin: functionality and incorporation into the complex

(2016) Lior Artzi et al.   Biotechnology for Biofuels

The predatory life cycle of Myxococcus xanthus

(2016) Ryan Keane et al.   MICROBIOLOGY-SGM

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

The outer-membrane export signal of Porphyromonas gingivalis type IX secretion system (T9SS) is a conserved C-terminal β-sandwich domain

(2016) Iñaki de Diego et al.   Scientific Reports

Understanding the structure and function of bacterial expansins: a prerequisite towards practical applications for the bioenergy and agricultural industries

(2016) Claudia Martinez-Anaya   Microbial Biotechnology

Integration of bacterial expansin-like proteins into cellulosome promotes the cellulose degradation

(2015) Chao Chen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bacterial expansins and related proteins from the world of microbes

(2015) Nikolaos Georgelis et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Disordered regions in transmembrane proteins

(2015) Gábor E. Tusnády et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Binding characteristics and synergistic effects of bacterial expansins on cellulosic and hemicellulosic substrates

(2015) Benjarat Bunterngsook et al.   BIORESOURCE TECHNOLOGY

Xanthomonas campestris expansin-like X domain is a structurally disordered beta-sheet macromolecule capable of synergistically enhancing enzymatic efficiency of cellulose hydrolysis

(2015) Atílio Tomazini Junior et al.   BIOTECHNOLOGY LETTERS

Plant expansins: diversity and interactions with plant cell walls

(2015) Daniel J Cosgrove   CURRENT OPINION IN PLANT BIOLOGY

Secretion systems in Gram-negative bacteria: structural and mechanistic insights

(2015) Tiago R. D. Costa et al.   NATURE REVIEWS MICROBIOLOGY

Clostridium clariflavum : Key Cellulosome Players Are Revealed by Proteomic Analysis

(2015) Lior Artzi et al.   mBio

Porphyromonas gingivalis Type IX Secretion Substrates Are Cleaved and Modified by a Sortase-Like Mechanism

(2015) Dhana G. Gorasia et al.   PLoS Pathogens

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Identification of novel bacterial expansins and their synergistic actions on cellulose degradation

(2014) Benjarat Bunterngsook et al.   BIORESOURCE TECHNOLOGY

Functional Identification of Conserved Residues Involved inLactobacillus rhamnosusStrain GG Sortase Specificity and Pilus Biogenesis

(2014) François P. Douillard et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

PcExl1 a Novel Acid Expansin-Like Protein from the Plant Pathogen Pectobacterium carotovorum, Binds Cell Walls Differently to BsEXLX1

(2014) Miguel Olarte-Lozano et al.   PLoS One

Electrostatic analysis of bacterial expansins

(2014) Nina Pastor et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis

(2013) Hee Jin Lee et al.   BIORESOURCE TECHNOLOGY

Biochemical analysis of expansin-like proteins from microbes

(2013) Nikolaos Georgelis et al.   CARBOHYDRATE POLYMERS

Plant Expansins in Bacteria and Fungi: Evolution by Horizontal Gene Transfer and Independent Domain Fusion

(2013) Nikolas Nikolaidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Structure-Function Analysis of the Bacterial Expansin EXLX1

(2011) Nikolaos Georgelis et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Role of an expansin-like molecule in Dictyostelium morphogenesis and regulation of its gene expression by the signal transducer and activator of transcription protein Dd-STATa

(2010) Shun Ogasawara et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology

(2009) Tsai-Tien Tseng et al.   BMC MICROBIOLOGY

A protein secretion system linked to bacteroidete gliding motility and pathogenesis

(2009) K. Sato et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Class B β-expansins are needed for pollen separation and stigma penetration

(2009) Elene R. Valdivia et al.   SEXUAL PLANT REPRODUCTION

Functional characterization of a bacterial expansin fromBacillus subtilisfor enhanced enzymatic hydrolysis of cellulose

(2008) Eun Sil Kim et al.   BIOTECHNOLOGY AND BIOENGINEERING

Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization

(2008) F. Kerff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA