Cryptochrome-mediated blue-light signal contributes to lignin biosynthesis in stone cells in pear fruit

ETHYLENE RESPONSE FACTOR EjERF39- EjMYB8 complex activates cold-induced lignification of loquat fruit, via the biosynthetic gene Ej4CL1

(2020) Jing Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA-Seq analysis reveals the growth and photosynthetic responses of rapeseed (Brassica napus L.) under red and blue LEDs with supplemental yellow, green, or white light

(2020) Xiaoying Liu et al.   Horticulture Research

BBX16, a B‐box protein, positively regulates light‐induced anthocyanin accumulation by activating MYB10 in red pear

(2019) Songling Bai et al.   PLANT BIOTECHNOLOGY JOURNAL

PbrmiR397a regulates lignification during stone cell development in pear fruit

(2018) Cheng Xue et al.   PLANT BIOTECHNOLOGY JOURNAL

The bZip transcription factor HY5 mediates CRY1a -induced anthocyanin biosynthesis in tomato

(2018) Chao-Chao Liu et al.   PLANT CELL AND ENVIRONMENT

Secondary and sucrose metabolism regulated by different light quality combinations involved in melon tolerance to powdery mildew

(2018) Xin Jing et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The blue light signal transduction pathway is involved in anthocyanin accumulation in ‘Red Zaosu’ pear

(2018) Ruiyan Tao et al.   PLANTA

Blue light regulates secondary cell wall thickening via MYC2/MYC4 activation of the NST1-directed transcriptional network in Arabidopsis

(2018) Qian Zhang et al.   PLANT CELL

The quest for transcriptional hubs of lignin biosynthesis: beyond the NAC-MYB-gene regulatory network model

(2018) Misato Ohtani et al.   CURRENT OPINION IN BIOTECHNOLOGY

Shading Contributes to the Reduction of Stem Mechanical Strength by Decreasing Cell Wall Synthesis in Japonica Rice (Oryza sativa L.)

(2017) Longmei Wu et al.   Frontiers in Plant Science

Learning the Languages of the Chloroplast: Retrograde Signaling and Beyond

(2016) Kai Xun Chan et al.   Annual Review of Plant Biology

Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light

(2016) Ullas V. Pedmale et al.   CELL

Sensing the light environment in plants: photoreceptors and early signaling steps

(2015) Vinicius Costa Galvão et al.   CURRENT OPINION IN NEUROBIOLOGY

Secondary cell walls: biosynthesis and manipulation

(2015) Manoj Kumar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Blue-light dependent reactive oxygen species formation byArabidopsiscryptochrome may define a novel evolutionarily conserved signaling mechanism

(2015) Laurent Consentino et al.   NEW PHYTOLOGIST

Predawn and high intensity application of supplemental blue light decreases the quantum yield of PSII and enhances the amount of phenolic acids, flavonoids, and pigments in Lactuca sativa

(2015) Theoharis Ouzounis et al.   Frontiers in Plant Science

Abiotic stress induces change in Cinnamoyl CoA Reductase (CCR) protein abundance and lignin deposition in developing seedlings of Leucaena leucocephala

(2015) Sameer Srivastava et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

More cells, bigger cells or simply reorganization? Alternative mechanisms leading to changed internode architecture under contrasting stress regimes

(2013) Heidrun Huber et al.   NEW PHYTOLOGIST

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Photomorphogenesis—from One Photoreceptor to 14: 40 Years of Progress

(2012) Winslow R. Briggs et al.   Molecular Plant

Photosynthetic Quantum Yield Dynamics: From Photosystems to Leaves

(2012) S. W. Hogewoning et al.   PLANT CELL

The Cryptochromes: Blue Light Photoreceptors in Plants and Animals

(2011) Inês Chaves et al.   Annual Review of Plant Biology

Blue-light-mediated shade avoidance requires combined auxin and brassinosteroid action in Arabidopsis seedlings

(2011) Diederik H. Keuskamp et al.   PLANT JOURNAL

The action mechanisms of plant cryptochromes

(2011) Hongtao Liu et al.   TRENDS IN PLANT SCIENCE

Root Growth Inhibition and Lignification Induced by Salt Stress in Soybean

(2010) G. Y. S. Neves et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Abiotic and Biotic Stresses and Changes in the Lignin Content and Composition in Plants

(2010) Jullyana Cristina Magalhães Silva Moura et al.   Journal of Integrative Plant Biology

HYPOSENSITIVE TO LIGHT, an Alpha/Beta Fold Protein, Acts Downstream of ELONGATED HYPOCOTYL 5 to Regulate Seedling De-Etiolation

(2010) Xiao-Dong Sun et al.   Molecular Plant

Light Quality-Mediated Petiole Elongation in Arabidopsis during Shade Avoidance Involves Cell Wall Modification by Xyloglucan Endotransglucosylase/Hydrolases

(2010) R. Sasidharan et al.   PLANT PHYSIOLOGY

Study of the structure and biosynthetic pathway of lignin in stone cells of pear

(2010) Yongping Cai et al.   SCIENTIA HORTICULTURAE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

CRY1 inhibits COP1-mediated degradation of BIT1, a MYB transcription factor, to activate blue light-dependent gene expression in Arabidopsis

(2008) Sung Hyun Hong et al.   PLANT JOURNAL

Anatomy, ultrastructure and lignin distribution of stone cells in two Pyrus species

(2008) Shutian Tao et al.   PLANT SCIENCE