KNOX II transcription factor HOS59 functions in regulating rice grain size

The GW2-WG1-OsbZIP47 pathway controls grain size and weight in rice

(2021) Jianqin Hao et al.   Molecular Plant

PlantGSAD: a comprehensive gene set annotation database for plant species

(2021) Xuelian Ma et al.   NUCLEIC ACIDS RESEARCH

The LATERAL ROOT DENSITY gene regulates root growth during water stress in wheat

(2020) Dante F. Placido et al.   PLANT BIOTECHNOLOGY JOURNAL

Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice

(2020) Kun Wu et al.   SCIENCE

Interaction between metabolism and chromatin in plant models

(2020) Christian Lindermayr et al.   Molecular Metabolism

Control of Grain Size and Weight by the GSK2-LARGE1/OML4 Pathway in Rice

(2020) Jia Lyu et al.   PLANT CELL

Rice lectin protein r40c1 imparts drought tolerance by modulating S-adenosylmethionine synthase 2, stress-associated protein 8 and chromatin-associated proteins

(2020) Salman Sahid et al.   JOURNAL OF EXPERIMENTAL BOTANY

OsSPL18 controls grain weight and grain number in rice

(2019) Hua Yuan et al.   Journal of Genetics and Genomics

METHIONINE SYNTHASE 1 Is Involved in Chromatin Silencing by Maintaining DNA and Histone Methylation

(2019) Xiaojing Yan et al.   PLANT PHYSIOLOGY

A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness

(2019) Shaogan Wang et al.   PLANT PHYSIOLOGY

Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics

(2019) Qingchun Pan et al.   BMC GENOMICS

GRAIN SIZE AND NUMBER1Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between Grain Number per Panicle and Grain Size in Rice

(2018) Tao Guo et al.   PLANT CELL

A G-protein pathway determines grain size in rice

(2018) Shengyuan Sun et al.   Nature Communications

Control of grain size in rice

(2018) Na Li et al.   Plant Reproduction

Modulating plant growth–metabolism coordination for sustainable agriculture

(2018) Shan Li et al.   NATURE

Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice

(2017) Penggen Duan et al.   Molecular Plant

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

(2017) Laurel Cooper et al.   NUCLEIC ACIDS RESEARCH

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

The RLA1/SMOS1 Transcription Factor Functions with OsBZR1 to Regulate Brassinosteroid Signaling and Rice Architecture

(2017) Shenglong Qiao et al.   PLANT CELL

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

(2017) Jamie Waese et al.   PLANT CELL

WIDE AND THICK GRAIN 1 , which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice

(2017) Ke Huang et al.   PLANT JOURNAL

OsmiR396d Affects Gibberellin and Brassinosteroid Signaling to Regulate Plant Architecture in Rice

(2017) Yongyan Tang et al.   PLANT PHYSIOLOGY

08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice

(2017) Hua Yuan et al.   Rice

SNP-based analysis of genetic diversity reveals important alleles associated with seed size in rice

(2016) Weijie Tang et al.   BMC PLANT BIOLOGY

SLGcontrols grain size and leaf angle by modulating brassinosteroid homeostasis in rice

(2016) Zhiming Feng et al.   JOURNAL OF EXPERIMENTAL BOTANY

The pleiotropicABNORMAL FLOWER AND DWARF1affects plant height, floral development and grain yield in rice

(2016) Deyong Ren et al.   Journal of Integrative Plant Biology

OsSPL13 controls grain size in cultivated rice

(2016) Lizhen Si et al.   NATURE GENETICS

The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice

(2016) Shuangcheng Li et al.   PLANT BIOTECHNOLOGY JOURNAL

GAD1Encodes a Secreted Peptide That Regulates Grain Number, Grain Length, and Awn Development in Rice Domestication

(2016) Jing Jin et al.   PLANT CELL

Rice Leaf Angle and Grain Size Are Affected by the OsBUL1 Transcriptional Activator Complex

(2016) Seonghoe Jang et al.   PLANT PHYSIOLOGY

Loss of function atRAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice

(2016) Kanako Bessho-Uehara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A class II KNOX gene,KNOX4, controls seed physical dormancy

(2016) Maofeng Chai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice

(2016) Na Fang et al.   Rice

Diverse functions of KNOX transcription factors in the diploid body plan of plants

(2015) Katsutoshi Tsuda et al.   CURRENT OPINION IN PLANT BIOLOGY

A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2

(2015) Bei Qiao et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice

(2015) Jiang Hu et al.   Molecular Plant

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein

(2015) Xiaolei Zhu et al.   PLANT JOURNAL

OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production

(2015) Shuying Liu et al.   PLANT JOURNAL

An evolutionarily conserved gene,FUWA, plays a role in determining panicle architecture, grain shape and grain weight in rice

(2015) Jun Chen et al.   PLANT JOURNAL

An ontology approach to comparative phenomics in plants

(2015) Anika Oellrich et al.   Plant Methods

Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice

(2015) Song Xianwei et al.   PLANT PHYSIOLOGY

OsBRI1 Activates BR Signaling by Preventing Binding between the TPR and Kinase Domains of OsBSK3 via Phosphorylation

(2015) Baowen Zhang et al.   PLANT PHYSIOLOGY

OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice

(2015) Hua Wu et al.   PLANT SCIENCE

Activation ofBig Grain1significantly improves grain size by regulating auxin transport in rice

(2015) Linchuan Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SHOEBOX Modulates Root Meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation

(2015) Jintao Li et al.   PLoS Genetics

Antagonistic Roles for KNOX1 and KNOX2 Genes in Patterning the Land Plant Body Plan Following an Ancient Gene Duplication

(2015) Chihiro Furumizu et al.   PLoS Genetics

Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice

(2015) Penggen Duan et al.   Nature Plants

Blocking miR396 increases rice yield by shaping inflorescence architecture

(2015) Feng Gao et al.   Nature Plants

Control of grain size and rice yield by GL2-mediated brassinosteroid responses

(2015) Ronghui Che et al.   Nature Plants

Heterotrimeric G proteins regulate nitrogen-use efficiency in rice

(2014) Hongying Sun et al.   NATURE GENETICS

A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway

(2014) Koichiro Aya et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice

(2014) K. Tsuda et al.   PLANT CELL

Variations inCYP78A13coding region influence grain size and yield in rice

(2014) FAN XU et al.   PLANT CELL AND ENVIRONMENT

OsmiR396d-Regulated OsGRFs Function in Floral Organogenesis in Rice through Binding to Their Targets OsJMJ706 and OsCR4

(2014) H. Liu et al.   PLANT PHYSIOLOGY

An-1 Encodes a Basic Helix-Loop-Helix Protein That Regulates Awn Development, Grain Size, and Grain Number in Rice

(2013) J. Luo et al.   PLANT CELL

BLH1 and KNAT3 modulate ABA responses during germination and early seedling development in Arabidopsis

(2013) Dachan Kim et al.   PLANT JOURNAL

SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice

(2013) Penggen Duan et al.   PLANT JOURNAL

Down-Regulation of OsSPX1 Causes High Sensitivity to Cold and Oxidative Stresses in Rice Seedlings

(2013) Chunchao Wang et al.   PLoS One

KNOX2 Genes Regulate the Haploid-to-Diploid Morphological Transition in Land Plants

(2013) K. Sakakibara et al.   SCIENCE

An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG

(2012) Dany Heang et al.   BREEDING SCIENCE

The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3

(2012) Peng Qi et al.   CELL RESEARCH

Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors

(2012) Priyanka Paul et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A Kelch Motif-Containing Serine/Threonine Protein Phosphatase Determines the Large Grain QTL Trait in Rice

(2012) Zejun Hu et al.   Journal of Integrative Plant Biology

Control of grain size, shape and quality by OsSPL16 in rice

(2012) Shaokui Wang et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus

(2012) Eryang Li et al.   NEW PHYTOLOGIST

Involvement of OsJAZ8 in Jasmonate-Induced Resistance to Bacterial Blight in Rice

(2012) Shoko Yamada et al.   PLANT AND CELL PHYSIOLOGY

Gsp1 Triggers the Sexual Developmental Program Including Inheritance of Chloroplast DNA and Mitochondrial DNA inChlamydomonas reinhardtii

(2012) Yoshiki Nishimura et al.   PLANT CELL

Transcriptome profiling and methyl homeostasis of an Arabidopsis mutant deficient in S-adenosylhomocysteine hydrolase1 (SAHH1)

(2012) Bo Ouyang et al.   PLANT MOLECULAR BIOLOGY

BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice

(2012) Xiaoding Ma et al.   PLANT MOLECULAR BIOLOGY REPORTER

Antagonistic Actions of HLH/bHLH Proteins Are Involved in Grain Length and Weight in Rice

(2012) Dany Heang et al.   PLoS One

Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice

(2012) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice

(2011) Yuki Abe et al.   GENES & GENETIC SYSTEMS

Nuclear Targeting of Methyl-Recycling Enzymes in Arabidopsis thaliana Is Mediated by Specific Protein Interactions

(2011) Sanghyun Lee et al.   Molecular Plant

Positive Autoregulation of a KNOX Gene Is Essential for Shoot Apical Meristem Maintenance in Rice

(2011) K. Tsuda et al.   PLANT CELL

OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana

(2011) Eryang Li et al.   PLANT JOURNAL

Suppression of the rice heterotrimeric G protein β-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions

(2011) Yuzuko Utsunomiya et al.   PLANT JOURNAL

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation

(2010) Feng Li et al.   CELL RESEARCH

KNOX genes: versatile regulators of plant development and diversity

(2010) A. Hay et al.   DEVELOPMENT

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)

(2010) Kerstin Kaufmann et al.   Nature Protocols

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

CEAS: cis-regulatory element annotation system

(2009) Hyunjin Shin et al.   BIOINFORMATICS

A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice

(2009) Hidehiko Sunohara et al.   GENES & GENETIC SYSTEMS

ERECT PANICLE2 Encodes a Novel Protein That Regulates Panicle Erectness in Indica Rice

(2009) K. Zhu et al.   GENETICS

Deletion in a Quantitative Trait Gene qPE9-1 Associated With Panicle Erectness Improves Plant Architecture During Rice Domestication

(2009) Y. Zhou et al.   GENETICS

A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes

(2009) K. Mukherjee et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

Rice MicroRNA Effector Complexes and Targets

(2009) L. Wu et al.   PLANT CELL

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

(2008) Meenu Kapoor et al.   BMC GENOMICS

Early Sexual Origins of Homeoprotein Heterodimerization and Evolution of the Plant KNOX/BELL Family

(2008) Jae-Hyeok Lee et al.   CELL

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Quantitative Trait Loci (QTL) Analysis For Rice Grain Width and Fine Mapping of an Identified QTL Allele gw-5 in a Recombination Hotspot Region on Chromosome 5

(2008) X. Wan et al.   GENETICS

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants

(2008) Abdelaty Saleh et al.   Nature Protocols

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY