Identification of novel regulators required for early development of vein pattern in the cotyledons by single‐cell RNA ‐sequencing

Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root

(2021) Tian-Qi Zhang et al.   Nature Communications

Single-cell transcriptome atlas of the leaf and root of rice seedlings

(2021) Yu Wang et al.   Journal of Genetics and Genomics

Reconstruction of lateral root formation through single-cell RNA sequencing reveals order of tissue initiation

(2021) Laura Serrano-Ron et al.   Molecular Plant

Shoot and root single cell sequencing reveals tissue- and daytime-specific transcriptome profiles

(2021) Federico Apelt et al.   PLANT PHYSIOLOGY

SHORTROOT-Mediated Intercellular Signals Coordinate Phloem Development in Arabidopsis Roots

(2020) Hyoujin Kim et al.   PLANT CELL

SUPPRESSOR OF MAX2 1‐LIKE 5 promotes secondary phloem formation during radial stem growth

(2020) Eva‐Sophie Wallner et al.   PLANT JOURNAL

The photoperiodic response of hypocotyl elongation involves regulation of CDF1 and CDF5 activity

(2020) Guiomar Martín et al.   PHYSIOLOGIA PLANTARUM

WRKY15 Suppresses Tracheary Element Differentiation Upstream of VND7 During Xylem Formation

(2020) Shating Ge et al.   PLANT CELL

Global Dynamic Molecular Profiling of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing

(2020) Zhixin Liu et al.   Molecular Plant

Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions

(2020) Jos R. Wendrich et al.   SCIENCE

Transcriptional landscape of rice roots at the single-cell resolution

(2020) Qing Liu et al.   Molecular Plant

Single-cell RNA sequencing resolves molecular relationships among individual plant cells

(2019) Kook Hui Ryu et al.   PLANT PHYSIOLOGY

A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root

(2019) Tian-Qi Zhang et al.   Molecular Plant

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis

(2019) Margot E. Smit et al.   PLANT CELL

Suppression of DELLA signaling induces procambial cell formation in culture

(2018) Kyoko Yamazaki et al.   PLANT JOURNAL

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes

(2018) Bruce A. Rheaume et al.   Nature Communications

Spatial specificity of auxin responses coordinates wood formation

(2018) Klaus Brackmann et al.   Nature Communications

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

RNA Velocity: Molecular Kinetics from Single-Cell RNA-Seq

(2018) Valentine Svensson et al.   MOLECULAR CELL

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

Clubroot Disease Stimulates Early Steps of Phloem Differentiation and Recruits SWEET Sucrose Transporters within Developing Galls

(2018) Piotr Walerowski et al.   PLANT CELL

Molecular regulation of sucrose catabolism and sugar transport for development, defence and phloem function

(2017) Jun Li et al.   Journal of Integrative Plant Biology

The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering

(2017) Rossana Henriques et al.   NEW PHYTOLOGIST

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells

(2016) Yuki Kondo et al.   PLANT CELL

Sucrose Transporter ZmSut1 Expression and Localization Uncover New Insights into Sucrose Phloem Loading

(2016) R. Frank Baker et al.   PLANT PHYSIOLOGY

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants

(2015) Francisco Vera-Sirera et al.   DEVELOPMENTAL CELL

Functional relationship between mTERF4 and GUN1 in retrograde signaling

(2015) Xuwu Sun et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Novel System for Xylem Cell Differentiation in Arabidopsis thaliana

(2015) Yuki Kondo et al.   Molecular Plant

Sulfur-Responsive Elements in the 3′-Nontranscribed Intergenic Region Are Essential for the Induction ofSULFATE TRANSPORTER 2;1Gene Expression in Arabidopsis Roots under Sulfur Deficiency

(2015) Akiko Maruyama-Nakashita et al.   PLANT CELL

FE, a phloem-specific Myb-related protein, promotes flowering through transcriptional activation ofFLOWERING LOCUS TandFLOWERING LOCUS T INTERACTING PROTEIN 1

(2015) Mitsutomo Abe et al.   PLANT JOURNAL

PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis

(2015) Christina Joy Müller et al.   PLANT PHYSIOLOGY

Molecular Control of Cell Specification and Cell Differentiation During Procambial Development

(2014) Kaori Miyashima Furuta et al.   Annual Review of Plant Biology

Systematic analysis of phloem-feeding insect-induced transcriptional reprogramming in Arabidopsis highlights common features and reveals distinct responses to specialist and generalist insects

(2014) Christine H. Foyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation

(2014) K. M. Furuta et al.   SCIENCE

Plant GSK3 proteins regulate xylem cell differentiation downstream of TDIF–TDR signalling

(2014) Yuki Kondo et al.   Nature Communications

WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation

(2013) J. P. Etchells et al.   DEVELOPMENT

The Plant Vascular System: Evolution, Development and FunctionsF

(2013) William J. Lucas et al.   Journal of Integrative Plant Biology

FTIP1 Is an Essential Regulator Required for Florigen Transport

(2012) Lu Liu et al.   PLOS BIOLOGY

Phloem-Transported Cytokinin Regulates Polar Auxin Transport and Maintains Vascular Pattern in the Root Meristem

(2011) Anthony Bishopp et al.   CURRENT BIOLOGY

A Mutually Inhibitory Interaction between Auxin and Cytokinin Specifies Vascular Pattern in Roots

(2011) Anthony Bishopp et al.   CURRENT BIOLOGY

WOX4Imparts Auxin Responsiveness to Cambium Cells inArabidopsis

(2011) Stefanie Suer et al.   PLANT CELL

Phloem Ultrastructure and Pressure Flow: Sieve-Element-Occlusion-Related Agglomerations Do Not Affect Translocation

(2011) D. R. Froelich et al.   PLANT CELL

The PXY-CLE41 receptor ligand pair defines a multifunctional pathway that controls the rate and orientation of vascular cell division

(2010) J. P. Etchells et al.   DEVELOPMENT

MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor

(2010) Alexandra Schlereth et al.   NATURE

CLE Peptides can Negatively Regulate Protoxylem Vessel Formation via Cytokinin Signaling

(2010) Yuki Kondo et al.   PLANT AND CELL PHYSIOLOGY

TDIF Peptide Signaling Regulates Vascular Stem Cell Proliferation via the WOX4 Homeobox Gene in Arabidopsis

(2010) Y. Hirakawa et al.   PLANT CELL

WOX4 Promotes Procambial Development

(2010) J. Ji et al.   PLANT PHYSIOLOGY

Hormone interactions during vascular development

(2008) Jan Dettmer et al.   PLANT MOLECULAR BIOLOGY

Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system

(2008) Y. Hirakawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytokinins are central regulators of cambial activity

(2008) M. Matsumoto-Kitano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA