Reconstruction of lateral root formation through single-cell RNA sequencing reveals order of tissue initiation

An auxin-regulable oscillatory circuit drives the root clock in Arabidopsis

(2021) Juan Perianez-Rodriguez et al.   Science Advances

Specification and regulation of vascular tissue identity in the Arabidopsis embryo

(2020) Margot E. Smit et al.   DEVELOPMENT

Mobile PEAR transcription factors integrate positional cues to prime cambial growth

(2019) Shunsuke Miyashima et al.   NATURE

Single-cell RNA sequencing resolves molecular relationships among individual plant cells

(2019) Kook Hui Ryu et al.   PLANT PHYSIOLOGY

Dynamics of gene expression in single root cells of A. thaliana

(2019) Ken Jean-Baptiste et al.   PLANT CELL

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing

(2019) Tom Denyer et al.   DEVELOPMENTAL CELL

Molecular and Environmental Regulation of Root Development

(2019) Hans Motte et al.   Annual Review of Plant Biology

A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root

(2019) Tian-Qi Zhang et al.   Molecular Plant

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

(2019) Christine N. Shulse et al.   Cell Reports

WRKY18 and WRKY53 Coordinate with HISTONE ACETYLTRANSFERASE1 to Regulate Rapid Responses to Sugar

(2019) Qingshuai Chen et al.   PLANT PHYSIOLOGY

Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation

(2019) Gina M. Turco et al.   Cell Reports

Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks

(2019) Natalie M. Clark et al.   Nature Communications

Stem cells and plant regeneration

(2018) Pablo Perez-Garcia et al.   DEVELOPMENTAL BIOLOGY

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Transcriptome dynamics atArabidopsisgraft junctions reveal an intertissue recognition mechanism that activates vascular regeneration

(2018) Charles W. Melnyk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

Auxin response cell-autonomously controls ground tissue initiation in the earlyArabidopsisembryo

(2017) Barbara K. Möller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PLETHORA transcription factors orchestrate de novo organ patterning duringArabidopsislateral root outgrowth

(2017) Yujuan Du et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting gene regulatory networks by combining spatial and temporal gene expression data inArabidopsisroot stem cells

(2017) Maria Angels de Luis Balaguer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root Regeneration Triggers an Embryo-like Sequence Guided by Hormonal Interactions

(2016) Idan Efroni et al.   CELL

Rules and Self-Organizing Properties of Post-embryonic Plant Organ Cell Division Patterns

(2016) Daniel von Wangenheim et al.   CURRENT BIOLOGY

Control of Arabidopsis lateral root primordium boundaries by MYB36

(2016) María Fernández-Marcos et al.   NEW PHYTOLOGIST

Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells

(2016) Yuki Kondo et al.   PLANT CELL

Abscisic acid signaling is controlled by aBRANCHED1/HD-ZIP Icascade inArabidopsisaxillary buds

(2016) Eduardo González-Grandío et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Building a plant: cell fate specification in the early Arabidopsis embryo

(2015) C. A. ten Hove et al.   DEVELOPMENT

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Conserved Gene Expression Programs in Developing Roots from Diverse Plants

(2015) Ling Huang et al.   PLANT CELL

Inference of the Arabidopsis Lateral Root Gene Regulatory Network Suggests a Bifurcation Mechanism That Defines Primordia Flanking and Central Zones

(2015) Julien Lavenus et al.   PLANT CELL

MYB36 regulates the transition from proliferation to differentiation in theArabidopsisroot

(2015) Louisa M. Liberman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana

(2015) Ute Voß et al.   Nature Communications

Quantification of cell identity from single-cell gene expression profiles

(2015) Idan Efroni et al.   GENOME BIOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation

(2014) K. M. Furuta et al.   SCIENCE

To branch or not to branch: the role of pre-patterning in lateral root formation

(2013) J. M. Van Norman et al.   DEVELOPMENT

The Plant Vascular System: Evolution, Development and FunctionsF

(2013) William J. Lucas et al.   Journal of Integrative Plant Biology

Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues

(2013) M. Lucas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The establishment of asymmetry in Arabidopsis lateral root founder cells is regulated by LBD16/ASL18 and related LBD/ASL proteins

(2012) T. Goh et al.   DEVELOPMENT

OCTOPUS, a polarly localised membrane-associated protein, regulates phloem differentiation entry in Arabidopsis thaliana

(2012) E. Truernit et al.   DEVELOPMENT

Callose Biosynthesis Regulates Symplastic Trafficking during Root Development

(2011) Anne Vatén et al.   DEVELOPMENTAL CELL

Glutathione-Indole-3-Acetonitrile Is Required for Camalexin Biosynthesis inArabidopsis thaliana

(2011) Tongbing Su et al.   PLANT CELL

Founder cell specification

(2011) John W. Chandler   TRENDS IN PLANT SCIENCE

A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity

(2010) Bert De Rybel et al.   CURRENT BIOLOGY

The Arabidopsis thaliana STYLISH1 Protein Acts as a Transcriptional Activator Regulating Auxin Biosynthesis

(2010) D. M. Eklund et al.   PLANT CELL

CalS7 encodes a callose synthase responsible for callose deposition in the phloem

(2010) Bo Xie et al.   PLANT JOURNAL

VisuaLRTC: A New View on Lateral Root Initiation by Combining Specific Transcriptome Data Sets

(2010) B. Parizot et al.   PLANT PHYSIOLOGY

Receptor-Like Kinase ACR4 Restricts Formative Cell Divisions in the Arabidopsis Root

(2008) I. De Smet et al.   SCIENCE