GeCoViz: genomic context visualisation of prokaryotic genes from a functional and evolutionary perspective

A protease-mediated mechanism regulates the cytochrome c6/plastocyanin switch in Synechocystis sp. PCC 6803

(2021) Raquel García-Cañas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TREND: a platform for exploring protein function in prokaryotes based on phylogenetic, domain architecture and gene neighborhood analyses

(2020) Vadim M Gumerov et al.   NUCLEIC ACIDS RESEARCH

A widespread toxin−antitoxin system exploiting growth control via alarmone signaling

(2020) Steffi Jimmy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FlaGs and webFlaGs: discovering novel biology through the analysis of gene neighbourhood conservation

(2020) Chayan Kumar Saha et al.   BIOINFORMATICS

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

(2020) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes

(2019) Hila Sberro et al.   CELL

FunGeCo: a web-based tool for estimation of functional potential of bacterial genomes and microbiomes using gene context information

(2019) Swadha Anand et al.   BIOINFORMATICS

GeneSpy, a user-friendly and flexible genomic context visualizer

(2018) Pierre Simon Garcia et al.   BIOINFORMATICS

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Theory of prokaryotic genome evolution

(2016) Itamar Sela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours

(2012) Takuji Yamada et al.   Molecular Systems Biology

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes

(2011) Alexis P. Yelton et al.   PLoS Computational Biology

GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways

(2008) C. E. Martinez-Guerrero et al.   NUCLEIC ACIDS RESEARCH