Bacterial DNA excision repair pathways

A Peek Inside the Machines of Bacterial Nucleotide Excision Repair

(2021) Thanyalak Kraithong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Spatial coupling between DNA replication and mismatch repair in Caulobacter crescentus

(2021) Tiancong Chai et al.   NUCLEIC ACIDS RESEARCH

New insights into abasic site repair and tolerance

(2020) Petria S. Thompson et al.   DNA REPAIR

New Insights Into DNA Repair Revealed by NucS Endonucleases From Hyperthermophilic Archaea

(2020) Likui Zhang et al.   Frontiers in Microbiology

Structural biology of DNA abasic site protection by SRAP proteins

(2020) Katherine M. Amidon et al.   DNA REPAIR

Real-time investigation of the roles of ATP hydrolysis by UvrA and UvrB during DNA damage recognition in nucleotide excision repair

(2020) Thanyalak Kraithong et al.   DNA REPAIR

A skipping rope translocation mechanism in a widespread family of DNA repair helicases

(2020) Johann J Roske et al.   NUCLEIC ACIDS RESEARCH

YwqL (EndoV), ExoA and PolA act in a novel alternative excision pathway to repair deaminated DNA bases in Bacillus subtilis

(2019) Adriana G. Patlán et al.   PLoS One

The ATPase mechanism of UvrA2 reveals the distinct roles of proximal and distal ATPase sites in nucleotide excision repair

(2019) Brandon C Case et al.   NUCLEIC ACIDS RESEARCH

Roles of Bacillus subtilis RecA, Nucleotide Excision Repair, and Translesion Synthesis Polymerases in Counteracting Cr(VI)-Promoted DNA Damage

(2019) Fernando Santos-Escobar et al.   JOURNAL OF BACTERIOLOGY

Covalent binding of uracil DNA glycosylase UdgX to abasic DNA upon uracil excision

(2019) Woo-Chan Ahn et al.   Nature Chemical Biology

Suicide inactivation of the uracil DNA glycosylase UdgX by covalent complex formation

(2019) Jie Tu et al.   Nature Chemical Biology

Emerging Roles of DNA Glycosylases and the Base Excision Repair Pathway

(2019) Elwood A. Mullins et al.   TRENDS IN BIOCHEMICAL SCIENCES

Protection of abasic sites during DNA replication by a stable thiazolidine protein-DNA cross-link

(2019) Petria S. Thompson et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Mutation Rate Heterogeneity Increases Odds of Survival in Unpredictable Environments

(2019) Ivan Matic   MOLECULAR CELL

Reactive nitrogen species in host–bacterial interactions

(2019) Ferric C Fang et al.   CURRENT OPINION IN IMMUNOLOGY

Base-Independent DNA Base-Excision Repair of 8-Oxoguanine

(2018) Andrea Kreppel et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Bacterial EndoMS/NucS acts as a clamp-mediated mismatch endonuclease to prevent asymmetric accumulation of replication errors

(2018) Norihiko Takemoto et al.   NUCLEIC ACIDS RESEARCH

Activation of the mismatch-specific endonuclease EndoMS/NucS by the replication clamp is required for high fidelity DNA replication

(2018) Sonoko Ishino et al.   NUCLEIC ACIDS RESEARCH

Discovery of a dual protease mechanism that promotes DNA damage checkpoint recovery

(2018) Peter E. Burby et al.   PLoS Genetics

Incomplete base excision repair contributes to cell death from antibiotics and other stresses

(2018) Charley C. Gruber et al.   DNA REPAIR

Limited Capacity or Involvement of Excision Repair, Double-Strand Breaks, or Translesion Synthesis for Psoralen Cross-Link Repair inEscherichia coli

(2018) Jessica M. Cole et al.   GENETICS

HMCES Maintains Genome Integrity by Shielding Abasic Sites in Single-Strand DNA

(2018) Kareem N. Mohni et al.   CELL

DdcA antagonizes a bacterial DNA damage checkpoint

(2018) Peter E. Burby et al.   MOLECULAR MICROBIOLOGY

A bacterial DNA repair pathway specific to a natural antibiotic

(2018) Peter E. Burby et al.   MOLECULAR MICROBIOLOGY

Mechanisms of DNA damage, repair, and mutagenesis

(2017) Nimrat Chatterjee et al.   ENVIRONMENTAL AND MOLECULAR MUTAGENESIS

Toxicity and repair of DNA adducts produced by the natural product yatakemycin

(2017) Elwood A Mullins et al.   Nature Chemical Biology

Mutagenic cost of ribonucleotides in bacterial DNA

(2017) Jeremy W. Schroeder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of a DNA glycosylase that unhooks interstrand cross-links

(2017) Elwood A. Mullins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A non-canonical mismatch repair pathway in prokaryotes

(2017) A. Castañeda-García et al.   Nature Communications

Processing closely spaced lesions during Nucleotide Excision Repair triggers mutagenesis in E. coli

(2017) Régine Janel-Bintz et al.   PLoS Genetics

The Effect of Local Sequence Context on Mutational Bias of Genes Encoded on the Leading and Lagging Strands

(2016) Jeremy W. Schroeder et al.   CURRENT BIOLOGY

Evolution of the methyl directed mismatch repair system in Escherichia coli

(2016) Christopher D. Putnam   DNA REPAIR

Cho Endonuclease Functions during DNA Interstrand Cross-Link Repair in Escherichia coli

(2016) Anthonige Vidya Perera et al.   JOURNAL OF BACTERIOLOGY

A Catalytic Role for C–H/π Interactions in Base Excision Repair by Bacillus cereus DNA Glycosylase AlkD

(2016) Zachary D. Parsons et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Identification of a mismatch-specific endonuclease in hyperthermophilic Archaea

(2016) Sonoko Ishino et al.   NUCLEIC ACIDS RESEARCH

Mismatch repair in Gram-positive bacteria

(2016) Justin S. Lenhart et al.   RESEARCH IN MICROBIOLOGY

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease

(2016) Setsu Nakae et al.   STRUCTURE

Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli

(2016) Mathew Stracy et al.   Nature Communications

Inducible repair of alkylated DNA in microorganisms

(2015) Damian Mielecki et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH

The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions

(2015) Elwood A. Mullins et al.   NATURE

The BER necessities: the repair of DNA damage in human-adapted bacterial pathogens

(2015) Stijn van der Veen et al.   NATURE REVIEWS MICROBIOLOGY

A unique uracil-DNA binding protein of the uracil DNA glycosylase superfamily

(2015) Pau Biak Sang et al.   NUCLEIC ACIDS RESEARCH

Characterization of a novel DNA glycosylase fromS. sahachiroiinvolved in the reduction and repair of azinomycin B induced DNA damage

(2015) Shan Wang et al.   NUCLEIC ACIDS RESEARCH

The sliding clamp tethers the endonuclease domain of MutL to DNA

(2015) Monica C. Pillon et al.   NUCLEIC ACIDS RESEARCH

Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair

(2015) Yi Liao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ribonucleotides in DNA: Origins, repair and consequences

(2014) Jessica S. Williams et al.   DNA REPAIR

Base excision repair: A critical player in many games

(2014) Susan S. Wallace   DNA REPAIR

Investigation of bacterial nucleotide excision repair using single-molecule techniques

(2014) Bennett Van Houten et al.   DNA REPAIR

Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli

(2014) Alexandra Vaisman et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Hrq1, a Homolog of the Human RecQ4 Helicase, Acts Catalytically and Structurally to Promote Genome Integrity

(2014) Matthew L. Bochman et al.   Cell Reports

Trapping and visualizing intermediate steps in the mismatch repair pathwayin vivo

(2013) Justin S. Lenhart et al.   MOLECULAR MICROBIOLOGY

DNA–protein crosslinks processed by nucleotide excision repair and homologous recombination with base and strand preference in E. coli model system

(2013) Qingming Fang   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Cost of rNTP/dNTP pool imbalance at the replication fork

(2013) N. Y. Yao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small-angle X-ray scattering reveals architecture and A2B2stoichiometry of the UvrA-UvrB DNA damage sensor

(2013) Danaya Pakotiprapha et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Removal of Misincorporated Ribonucleotides from Prokaryotic Genomes: An Unexpected Role for Nucleotide Excision Repair

(2013) Alexandra Vaisman et al.   PLoS Genetics

DNA Damage Repair and Bacterial Pathogens

(2013) Darja Žgur-Bertok   PLoS Pathogens

Antibiotics produced by Streptomyces

(2012) Rudi Emerson de Lima Procópio et al.   Brazilian Journal of Infectious Diseases

DNA Repair and Genome Maintenance in Bacillus subtilis

(2012) J. S. Lenhart et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

DnaN clamp zones provide a platform for spatiotemporal coupling of mismatch detection to DNA replication

(2012) Justin S. Lenhart et al.   MOLECULAR MICROBIOLOGY

Structure and mechanism of the UvrA–UvrB DNA damage sensor

(2012) Danaya Pakotiprapha et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Mycobacterium smegmatis SftH exemplifies a distinctive clade of superfamily II DNA-dependent ATPases with 3′ to 5′ translocase and helicase activities

(2012) Lyudmila Yakovleva et al.   NUCLEIC ACIDS RESEARCH

How does the oxidative burst of macrophages kill bacteria? Still an open question

(2011) James M. Slauch   MOLECULAR MICROBIOLOGY

Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork

(2011) Andrew D. Klocko et al.   MOLECULAR MICROBIOLOGY

DNA Damage and Reactive Nitrogen Species are Barriers to Vibrio cholerae Colonization of the Infant Mouse Intestine

(2011) Bryan W. Davies et al.   PLoS Pathogens

Structure of the Endonuclease Domain of MutL: Unlicensed to Cut

(2010) Monica C. Pillon et al.   MOLECULAR CELL

Mycobacteria exploit three genetically distinct DNA double-strand break repair pathways

(2010) Richa Gupta et al.   MOLECULAR MICROBIOLOGY

Conservation and diversity of MutS proteins

(2010) Paweł Sachadyn   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Genome instability due to ribonucleotide incorporation into DNA

(2010) Stephanie A Nick McElhinny et al.   Nature Chemical Biology

Role of the Y-Family DNA Polymerases YqjH and YqjW in Protecting Sporulating Bacillus subtilis Cells from DNA Damage

(2009) Andrea M. Rivas-Castillo et al.   CURRENT MICROBIOLOGY

The alkyltransferase-like ybaZ gene product enhances nucleotide excision repair of O6-alkylguanine adducts in E. coli

(2009) Gerard Mazon et al.   DNA REPAIR

Characterization of the Azinomycin B Biosynthetic Gene Cluster Revealing a Different Iterative Type I Polyketide Synthase for Naphthoate Biosynthesis

(2008) Qunfei Zhao et al.   CHEMISTRY & BIOLOGY

Base Excision Repair and its Role in Maintaining Genome Stability

(2008) Joke Baute et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

β Clamp Directs Localization of Mismatch Repair in Bacillus subtilis

(2008) Lyle A. Simmons et al.   MOLECULAR CELL