The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions

Critical role of DNA intercalation in enzyme-catalyzed nucleotide flipping

(2014) Jenna M. Hendershot et al.   NUCLEIC ACIDS RESEARCH

DNA–protein π-interactions in nature: abundance, structure, composition and strength of contacts between aromatic amino acids and DNA nucleobases or deoxyribose sugar

(2014) Katie A. Wilson et al.   NUCLEIC ACIDS RESEARCH

Mechanisms for enzymatic cleavage of the N-glycosidic bond in DNA

(2014) Alexander C. Drohat et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Two-Component System Cross-Regulation Integrates Bacillus anthracis Response to Heme and Cell Envelope Stress

(2014) Laura A. Mike et al.   PLoS Pathogens

The substrate binding interface of alkylpurine DNA glycosylase AlkD

(2013) Elwood A. Mullins et al.   DNA REPAIR

An HPLC–tandem mass spectrometry method for simultaneous detection of alkylated base excision repair products

(2013) Elwood A. Mullins et al.   METHODS

Self-Resistance to an Antitumor Antibiotic: A DNA Glycosylase Triggers the Base-Excision Repair System in Yatakemycin Biosynthesis

(2012) Hui Xu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Recent advances in the structural mechanisms of DNA glycosylases

(2012) Sonja C. Brooks et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Non-productive DNA damage binding by DNA glycosylase-like protein Mag2 from Schizosaccharomyces pombe

(2012) Suraj Adhikary et al.   DNA REPAIR

Alkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-  interactions

(2012) O. J. Wilkinson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sculpting of DNA at Abasic Sites by DNA Glycosylase Homolog Mag2

(2012) Bjørn Dalhus et al.   STRUCTURE

Profiling base excision repair glycosylases with synthesized transition state analogs

(2011) Aurea M. Chu et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Understanding the Acid-Base Properties of Adenosine: The Intrinsic Basicities of N1, N3 and N7

(2011) Larisa E. Kapinos  et al.   CHEMISTRY-A EUROPEAN JOURNAL

Analysis of substrate specificity of Schizosaccharomyces pombe Mag1 alkylpurine DNA glycosylase

(2011) Suraj Adhikary et al.   EMBO REPORTS

Structural Characterization of Viral Ortholog of Human DNA Glycosylase NEIL1 Bound to Thymine Glycol or 5-Hydroxyuracil-containing DNA

(2011) Kayo Imamura et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

An unprecedented nucleic acid capture mechanism for excision of DNA damage

(2010) Emily H. Rubinson et al.   NATURE

Direct detection of CH/π interactions in proteins

(2010) Michael J. Plevin et al.   Nature Chemistry

Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions

(2009) Aleksandr V. Marenich et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Bacillus anthracisHssRS signalling to HrtAB regulates haem resistance during infection

(2009) Devin L. Stauff et al.   MOLECULAR MICROBIOLOGY

Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme

(2009) Yan Qi et al.   NATURE

Flipping of alkylated DNA damage bridges base and nucleotide excision repair

(2009) Julie L. Tubbs et al.   NATURE

A universal approach for continuum solvent pK a calculations: are we there yet?

(2009) Junming Ho et al.   THEORETICAL CHEMISTRY ACCOUNTS

A New Protein Architecture for Processing Alkylation Damaged DNA: The Crystal Structure of DNA Glycosylase AlkD

(2008) Emily H. Rubinson et al.   JOURNAL OF MOLECULAR BIOLOGY

Eukaryotic Y-family polymerases bypass a 3-methyl-2′-deoxyadenosine analog in vitro and methyl methanesulfonate-induced DNA damage in vivo

(2008) Brian S. Plosky et al.   NUCLEIC ACIDS RESEARCH

HOLLOW: Generating Accurate Representations of Channel and Interior Surfaces in Molecular Structures

(2008) Bosco K Ho et al.   BMC STRUCTURAL BIOLOGY