Colistin resistance inSalmonellaandEscherichia coliisolates from a pig farm in Great Britain

Dissemination of the mcr-1 colistin resistance gene

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Dissemination of the mcr-1 colistin resistance gene

(2016) Yongfei Hu et al.   LANCET INFECTIOUS DISEASES

Dissemination of the mcr-1 colistin resistance gene

(2016) Hattie E Webb et al.   LANCET INFECTIOUS DISEASES

Dissemination of the mcr-1 colistin resistance gene

(2016) Herman Tse et al.   LANCET INFECTIOUS DISEASES

Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study

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Impact of Ciprofloxacin and Clindamycin Administration on Gram-Negative Bacteria Isolated from Healthy Volunteers and Characterization of the Resistance Genes They Harbor

(2015) Roderick M. Card et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Detection ofmcr-1encoding plasmid-mediated colistin-resistantEscherichia coliisolates from human bloodstream infection and imported chicken meat, Denmark 2015

(2015) Henrik Hasman et al.   Eurosurveillance

Use of colistin-containing products within the European Union and European Economic Area (EU/EEA): development of resistance in animals and possible impact on human and animal health

(2015) Boudewijn Catry et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Development of colistin resistance in pmrA-, phoP-, parR- and cprR-inactivated mutants of Pseudomonas aeruginosa

(2014) Ji-Young Lee et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

What do we know about resistance to colistin in Enterobacteriaceae in avian and pig production in Europe?

(2013) Isabelle Kempf et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data

(2013) N. Stoesser et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes

(2013) Shin-Hung Lin et al.   PLoS One

Carbapenemases in Klebsiella pneumoniae and Other Enterobacteriaceae: an Evolving Crisis of Global Dimensions

(2012) L. S. Tzouvelekis et al.   CLINICAL MICROBIOLOGY REVIEWS

Escherichia coli Serotype O55:H7 Diversity Supports Parallel Acquisition of Bacteriophage at Shiga Toxin Phage Insertion Sites during Evolution of the O157:H7 Lineage

(2012) J. L. Kyle et al.   JOURNAL OF BACTERIOLOGY

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Identifying antimicrobial resistance genes of human clinical relevance within Salmonella isolated from food animals in Great Britain

(2011) Muna F. Anjum et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport

(2009) Z. Pan et al.   MICROBIOLOGY-SGM

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

(2009) Y. Ogura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH