Modeling Non-additive Effects in Neighboring Chemically Identical Fluorophores

Generalizing HMMs to Continuous Time for Fast Kinetics: Hidden Markov Jump Processes

(2021) Zeliha Kilic et al.   BIOPHYSICAL JOURNAL

Haemophilin-Producing Strains of Haemophilus haemolyticus Protect Respiratory Epithelia from NTHi Colonisation and Internalisation

(2021) Brianna Atto et al.   Pathogens

Picosecond time-resolved photon antibunching measures nanoscale exciton motion and the true number of chromophores

(2021) Gordon J. Hedley et al.   Nature Communications

Challenges facing quantitative large-scale optical super-resolution, and some simple solutions

(2021) Tal M. Dankovich et al.   iScience

Fast and accurate sCMOS noise correction for fluorescence microscopy

(2020) Biagio Mandracchia et al.   Nature Communications

Pitching Single-Focus Confocal Data Analysis One Photon at a Time with Bayesian Nonparametrics

(2020) Meysam Tavakoli et al.   Physical Review X

A 6-nm ultra-photostable DNA FluoroCube for fluorescence imaging

(2020) Stefan Niekamp et al.   NATURE METHODS

Zero-Overlap Fluorophores for Fluorescent Studies at Any Concentration

(2020) Ayan Dhara et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Stoichiometric analysis of protein complexes by cell fusion and single molecule imaging

(2020) Avtar Singh et al.   Scientific Reports

Interchromophoric Interactions Determine the Maximum Brightness Density in DNA Origami Structures

(2019) Tim Schröder et al.   NANO LETTERS

Resonance Energy Transfer: From Fundamental Theory to Recent Applications

(2019) Garth A. Jones et al.   Frontiers in Physics

An alternative framework for fluorescence correlation spectroscopy

(2019) Sina Jazani et al.   Nature Communications

Single molecule force spectroscopy at high data acquisition: A Bayesian nonparametric analysis

(2018) Ioannis Sgouralis et al.   JOURNAL OF CHEMICAL PHYSICS

Using Single Molecule mRNA Fluorescent in Situ Hybridization (RNA-FISH) to Quantify mRNAs in Individual Murine Oocytes and Embryos

(2018) Fang Xie et al.   Scientific Reports

A Bayesian Nonparametric Approach to Single Molecule Förster Resonance Energy Transfer

(2018) Ioannis Sgouralis et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Photons in - numbers out: perspectives in quantitative fluorescence microscopy for in situ protein counting

(2018) K S Gruβmayer et al.   Methods and Applications in Fluorescence

A novel method to accurately locate and count large numbers of steps by photobleaching

(2016) Konstantinos Tsekouras et al.   MOLECULAR BIOLOGY OF THE CELL

Automated Analysis of Single-Molecule Photobleaching Data by Statistical Modeling of Spot Populations

(2015) Clarissa Liesche et al.   BIOPHYSICAL JOURNAL

A Compact DNA Cube with Side Length 10 nm

(2015) Max B. Scheible et al.   Small

Single-molecule in vivo imaging of bacterial respiratory complexes indicates delocalized oxidative phosphorylation

(2014) Isabel Llorente-Garcia et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Single Molecule Fluorescence Approaches Shed Light on Intracellular RNAs

(2014) Sethuramasundaram Pitchiaya et al.   CHEMICAL REVIEWS

Deciphering the Subunit Composition of Multimeric Proteins by Counting Photobleaching Steps

(2014) Ryan J. Arant et al.   CHEMPHYSCHEM

Molecular counting by photobleaching in protein complexes with many subunits: best practices and application to the cellulose synthesis complex

(2014) Yalei Chen et al.   MOLECULAR BIOLOGY OF THE CELL

Dissecting non-coding RNA mechanisms in cellulo by Single-molecule High-Resolution Localization and Counting

(2013) Sethuramasundaram Pitchiaya et al.   METHODS

A Stochastic Model for Electron Multiplication Charge-Coupled Devices – From Theory to Practice

(2013) Michael Hirsch et al.   PLoS One

AMPA receptor/TARP stoichiometry visualized by single-molecule subunit counting

(2013) P. Hastie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative analysis of photoactivated localization microscopy (PALM) datasets using pair-correlation analysis

(2012) Prabuddha Sengupta et al.   BIOESSAYS

Automating Single Subunit Counting of Membrane Proteins in Mammalian Cells

(2012) Hugo McGuire et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM)

(2012) S.-H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Counting protein molecules using quantitative fluorescence microscopy

(2012) Valerie C. Coffman et al.   TRENDS IN BIOCHEMICAL SCIENCES

Point centromeres contain more than a single centromere-specific Cse4 (CENP-A) nucleosome

(2011) Josh Lawrimore et al.   JOURNAL OF CELL BIOLOGY

CENP-A exceeds microtubule attachment sites in centromere clusters of both budding and fission yeast

(2011) Valerie C. Coffman et al.   JOURNAL OF CELL BIOLOGY

Subunit stoichiometry of human Orai1 and Orai3 channels in closed and open states

(2011) A. Demuro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signal-dependent turnover of the bacterial flagellar switch protein FliM

(2010) N. J. Delalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of instrument response functions for lifetime imaging detectors using quenched Rose Bengal solutions

(2009) Mariusz Szabelski et al.   CHEMICAL PHYSICS LETTERS

Investigation of Stoichiometry of T4 Bacteriophage Helicase Loader Protein (gp59)

(2009) Sri Ranjini Arumugam et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Intraflagellar transport particle size scales inversely with flagellar length: revisiting the balance-point length control model

(2009) Benjamin D. Engel et al.   JOURNAL OF CELL BIOLOGY

Extreme Faint Flux Imaging with an EMCCD

(2009) Olivier Daigle et al.   PUBLICATIONS OF THE ASTRONOMICAL SOCIETY OF THE PACIFIC

Instrument response standard in time-resolved fluorescence

(2009) Rafal Luchowski et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

(2008) Rudolf Amann et al.   NATURE REVIEWS MICROBIOLOGY