Molecular dissemination of emerging antibiotic, biocide, and metal co-resistomes in the Himalayan hot springs

Antibiotic resistance in bacterial isolates from freshwater samples in Fildes Peninsula, King George Island, Antarctica

(2020) Daniela Jara et al.   Scientific Reports

A complete domain-to-species taxonomy for Bacteria and Archaea

(2020) Donovan H. Parks et al.   NATURE BIOTECHNOLOGY

Triclosan at environmental concentrations can enhance the spread of extracellular antibiotic resistance genes through transformation

(2020) Ji Lu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbiome and ecology of a hot spring-microbialite system on the Trans-Himalayan Plateau

(2020) Chayan Roy et al.   Scientific Reports

Co‐occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site

(2020) Jesse C. Thomas et al.   Microbial Biotechnology

The Role of Bacterial Membrane Vesicles in the Dissemination of Antibiotic Resistance and as Promising Carriers for Therapeutic Agent Delivery

(2020) Md Jalal Uddin et al.   Microorganisms

Metagenomics revealing molecular profiling of community structure and metabolic pathways in natural hot springs of the Sikkim Himalaya

(2020) Nitish Sharma et al.   BMC MICROBIOLOGY

Enterobacteriaceae predominate in the endophytic microbiome and contribute to the resistome of strawberry

(2020) Houpu Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Differential prevalence and host-association of antimicrobial resistance traits in disinfected and non-disinfected drinking water systems

(2020) Maria Sevillano et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Antibiotic Resistance in Minimally Human-Impacted Environments

(2020) Laura C. Scott et al.   International Journal of Environmental Research and Public Health

Diversity analysis and metagenomic insights into antibiotic and metal resistance among Himalayan hot spring bacteriobiome insinuating inherent environmental baseline levels of antibiotic and metal tolerance

(2020) Ishfaq Nabi Najar et al.   Journal of Global Antimicrobial Resistance

Distribution of antibiotic and metal resistance genes in two glaciers of North Sikkim, India

(2020) Mingma Thundu Sherpa et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Metal resistance genes enrichment in marine biofilm communities selected by biocide-containing surfaces in temperate and tropical coastal environments

(2020) Elisa C.P. Catao et al.   ENVIRONMENTAL POLLUTION

SYN-View: A Phylogeny-Based Synteny Exploration Tool for the Identification of Gene Clusters Linked to Antibiotic Resistance

(2020) Jason Stahlecker et al.   MOLECULES

Urban wastewater as a conduit for pathogenic Gram-positive bacteria and genes encoding resistance to β-lactams and glycopeptides

(2020) Nicoletta Makowska et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Putative antibiotic resistance genes present in extant Bacillus licheniformis and Bacillus paralicheniformis strains are probably intrinsic and part of the ancient resistome

(2019) Yvonne Agersø et al.   PLoS One

Antibiotic resistance and heavy metal tolerance in cultured bacteria from hot springs as indicators of environmental intrinsic resistance and tolerance levels

(2019) Jocelyn Jardine et al.   ENVIRONMENTAL POLLUTION

Understanding drivers of antibiotic resistance genes in High Arctic soil ecosystems

(2019) Clare M. McCann et al.   ENVIRONMENT INTERNATIONAL

Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya

(2019) Jitesh Kumar et al.   Frontiers in Microbiology

Antibiotic resistance in urban green spaces mirrors the pattern of industrial distribution

(2019) Zhen-Zhen Yan et al.   ENVIRONMENT INTERNATIONAL

Antibiotic resistance in major rivers in the world: A systematic review on occurrence, emergence, and management strategies

(2019) Rachna Singh et al.   JOURNAL OF CLEANER PRODUCTION

A Novel D-Allulose 3-Epimerase Gene from the Metagenome of a Thermal Aquatic Habitat and D-Allulose Production by Bacillus subtilis Whole-Cell Catalysis

(2019) Satya Narayan Patel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antibiotic resistance genes identified in wastewater treatment plant systems – A review

(2019) Magdalena Pazda et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Antibiotics and antibiotic resistance genes in global lakes: A review and meta-analysis

(2018) Yuyi Yang et al.   ENVIRONMENT INTERNATIONAL

The First Report of Phenotypic and Molecular Characterization of Extended-Spectrum Beta-Lactamase-Producing Uropathogens in Sikkim and Darjeeling Hills of India

(2018) Varsha Rani Gajamer et al.   Microbial Drug Resistance

KBase: The United States Department of Energy Systems Biology Knowledgebase

(2018) Adam P Arkin et al.   NATURE BIOTECHNOLOGY

Microbial ecology of two hot springs of Sikkim: Predominate population and geochemistry

(2018) Ishfaq Nabi Najar et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Surviving in hot and cold: psychrophiles and thermophiles from Deception Island volcano, Antarctica

(2018) Amanda G. Bendia et al.   EXTREMOPHILES

Metagenomic analysis of geothermal water reservoir sites exploring carbohydrate-related thermozymes

(2018) Girija Kaushal et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Genome hypermobility by lateral transduction

(2018) John Chen et al.   SCIENCE

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Characterization of Thermophilic Bacteria Isolated from two Hot Springs in Jazan, Saudi Arabia

(2017) Khaled E. El-Gayar et al.   JOURNAL OF PURE AND APPLIED MICROBIOLOGY

Hot springs of Indian Himalayas: potential sources of microbial diversity and thermostable hydrolytic enzymes

(2017) Harmesh Sahay et al.   3 Biotech

Hot springs of Indian Himalayas: potential sources of microbial diversity and thermostable hydrolytic enzymes

(2017) Harmesh Sahay et al.   3 Biotech

Metagenomic Analysis Revealing Antibiotic Resistance Genes (ARGs) and Their Genetic Compartments in the Tibetan Environment

(2016) Baowei Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection

(2016) Li-Guan Li et al.   ISME Journal

Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics

(2016) Johan Bengtsson-Palme et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Characterization of triclosan metabolism in Sphingomonas sp. strain YL-JM2C

(2016) Sikandar I. Mulla et al.   Scientific Reports

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Review of Antimicrobial Resistance in the Environment and Its Relevance to Environmental Regulators

(2016) Andrew C. Singer et al.   Frontiers in Microbiology

Bacterial and archeal community composition in hot springs from Indo-Burma region, North-east India

(2016) Amrita Kumari Panda et al.   AMB Express

Natural Hot Spots for Gain of Multiple Resistances: Arsenic and Antibiotic Resistances in Heterotrophic, Aerobic Bacteria from Marine Hydrothermal Vent Fields

(2015) Pedro Farias et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

(2015) Chandan Pal et al.   BMC GENOMICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing

(2015) Chia Sing Chan et al.   Frontiers in Microbiology

The impact of triclosan on the spread of antibiotic resistance in the environment

(2015) Daniel E. Carey et al.   Frontiers in Microbiology

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

SyntTax: a web server linking synteny to prokaryotic taxonomy

(2013) Jacques Oberto   BMC BIOINFORMATICS

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

The barley HvNAC6 transcription factor affects ABA accumulation and promotes basal resistance against powdery mildew

(2013) Yan-Jun Chen et al.   PLANT MOLECULAR BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Distribution of antibiotic resistance genes in glacier environments

(2012) Takahiro Segawa et al.   Environmental Microbiology Reports

Heavy metal driven co-selection of antibiotic resistance in soil and water bodies impacted by agriculture and aquaculture

(2012) Claudia Seiler et al.   Frontiers in Microbiology

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

(2011) A.-P. Magiorakos et al.   CLINICAL MICROBIOLOGY AND INFECTION

Horizontal Gene Exchange in Environmental Microbiota

(2011) Rustam I. Aminov   Frontiers in Microbiology

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

ACLAME: A CLAssification of Mobile genetic Elements, update 2010

(2009) Raphaël Leplae et al.   NUCLEIC ACIDS RESEARCH

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

(2008) H. Noguchi et al.   DNA RESEARCH