Genomic inbreeding coefficients using imputed genotypes: Assessing different estimators in Holstein-Friesian dairy cows

Genetic Diversity in the Italian Holstein Dairy Cattle Based on Pedigree and SNP Data Prior and After Genomic Selection

(2022) Michela Ablondi et al.   Frontiers in Veterinary Science

Keep Garfagnina alive. An integrated study on patterns of homozygosity, genomic inbreeding, admixture and breed traceability of the Italian Garfagnina goat breed

(2021) Christos Dadousis et al.   PLoS One

Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information

(2021) Pattarapol Sumreddee et al.   BMC GENOMICS

Genome-wide scan reveals genetic divergence in Italian Holstein cows bred within PDO cheese production chains

(2021) Michela Ablondi et al.   Scientific Reports

Genetic diversity and population history of eight Italian beef cattle breeds using measures of autozygosity

(2021) Maria Chiara Fabbri et al.   PLoS One

Comparative evaluation of genomic inbreeding parameters in seven commercial and autochthonous pig breeds

(2020) G. Schiavo et al.   Animal

How to study runs of homozygosity using PLINK? A guide for analyzing medium density SNP data in livestock and pet species

(2020) R. Meyermans et al.   BMC GENOMICS

Short communication: Methods to compute genomic inbreeding for ungenotyped individuals

(2020) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

Evaluating different genomic coancestry matrices for managing genetic variability in turbot

(2020) Elisabeth Morales-González et al.   AQUACULTURE

Reconstitution and modernization of lost Holstein male lineages using samples from a gene bank

(2020) C.D. Dechow et al.   JOURNAL OF DAIRY SCIENCE

Controlling Coancestry and Thereby Future Inbreeding by Optimum-Contribution Selection Using Alternative Genomic-Relationship Matrices

(2020) G. T. Gebregiwergis et al.   Frontiers in Genetics

Symposium review: Exploiting homozygosity in the era of genomics—Selection, inbreeding, and mating programs

(2020) C. Maltecca et al.   JOURNAL OF DAIRY SCIENCE

Recent demographic history inferred by high-resolution analysis of linkage disequilibrium

(2020) Enrique Santiago et al.   MOLECULAR BIOLOGY AND EVOLUTION

Management of Genetic Diversity in the Era of Genomics

(2020) Theo H. E. Meuwissen et al.   Frontiers in Genetics

On the estimation of inbreeding depression using different measures of inbreeding from molecular markers

(2020) Armando Caballero et al.   Evolutionary Applications

Symposium review: The genomic architecture of inbreeding: How homozygosity affects health and performance

(2019) Christine F. Baes et al.   JOURNAL OF DAIRY SCIENCE

Discovering ancestors and connecting relatives in large genomic databases

(2019) J.P. Nani et al.   JOURNAL OF DAIRY SCIENCE

Short communication: Two dominant paternal lineages for North American Jersey artificial insemination sires

(2018) C.D. Dechow et al.   JOURNAL OF DAIRY SCIENCE

Nonequivalent lethal equivalents: Models and inbreeding metrics for unbiased estimation of inbreeding load

(2018) Pirmin Nietlisbach et al.   Evolutionary Applications

How to estimate kinship

(2018) Jérôme Goudet et al.   MOLECULAR ECOLOGY

A 100-Year Review: Methods and impact of genetic selection in dairy cattle—From daughter–dam comparisons to deep learning algorithms

(2017) K.A. Weigel et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Inbreeding in the genomics era: Inbreeding, inbreeding depression, and management of genomic variability

(2017) Jeremy T. Howard et al.   JOURNAL OF DAIRY SCIENCE

A model-based approach to characterize individual inbreeding at both global and local genomic scales

(2017) T. Druet et al.   MOLECULAR ECOLOGY

Detection and quantification of inbreeding depression for complex traits from SNP data

(2017) Loic Yengo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic inbreeding estimation in small populations: evaluation of runs of homozygosity in three local dairy cattle breeds

(2016) S. Mastrangelo et al.   Animal

Identification of a nonsense mutation in APAF1 that is likely causal for a decrease in reproductive efficiency in Holstein dairy cattle

(2016) Heather A. Adams et al.   JOURNAL OF DAIRY SCIENCE

Genomic analysis reveals depression due to both individual and maternal inbreeding in a free-living mammal population

(2016) Camillo Bérénos et al.   MOLECULAR ECOLOGY

Inbreeding depression across the lifespan in a wild mammal population

(2016) Jisca Huisman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds

(2015) Qianqian Zhang et al.   BMC GENETICS

A limited number of Y chromosome lineages is present in North American Holsteins

(2015) Xiang-Peng Yue et al.   JOURNAL OF DAIRY SCIENCE

Genome-Wide Estimates of Coancestry, Inbreeding and Effective Population Size in the Spanish Holstein Population

(2015) Silvia Teresa Rodríguez-Ramilo et al.   PLoS One

Inbreeding depression in livestock species: review and meta-analysis

(2014) G. Leroy   ANIMAL GENETICS

Analysis of runs of homozygosity and their relationship with inbreeding in five cattle breeds farmed in Italy

(2014) Gabriele Marras et al.   ANIMAL GENETICS

Inbreeding Coefficient Estimation with Dense SNP Data: Comparison of Strategies and Application to HapMap III

(2014) Steven Gazal et al.   HUMAN HEREDITY

Inbreeding and runs of homozygosity: A possible solution to an old problem

(2014) Ino Curik et al.   Livestock Science

Identity by Descent: Variation in Meiosis, Across Genomes, and in Populations

(2013) E. A. Thompson   GENETICS

Visualization of the transmission of direct genomic values for paternal and maternal chromosomes for 15 traits in US Brown Swiss, Holstein, and Jersey cattle

(2013) J.B. Cole et al.   JOURNAL OF DAIRY SCIENCE

Short communication: Imputing genotypes using PedImpute fast algorithm combining pedigree and population information

(2013) E.L. Nicolazzi et al.   JOURNAL OF DAIRY SCIENCE

Evaluation of inbreeding depression in Holstein cattle using whole-genome SNP markers and alternative measures of genomic inbreeding

(2013) D.W. Bjelland et al.   JOURNAL OF DAIRY SCIENCE

Using genomic tools to maintain diversity and fitness in conservation programmes

(2013) María Ángeles Rodríguez de Cara et al.   MOLECULAR ECOLOGY

Genomic Patterns of Homozygosity in Worldwide Human Populations

(2012) Trevor J. Pemberton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Runs of homozygosity and population history in cattle

(2012) Deirdre C Purfield et al.   BMC GENETICS

Use of the Illumina Bovine3K BeadChip in dairy genomic evaluation1

(2012) G.R. Wiggans et al.   JOURNAL OF DAIRY SCIENCE

Quantification of Inbreeding Due to Distant Ancestors and Its Detection Using Dense Single Nucleotide Polymorphism Data

(2011) Matthew C. Keller et al.   GENETICS

Variation in actual relationship as a consequence of Mendelian sampling and linkage

(2011) W.G. HILL et al.   Genetics Research

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle

(2010) Megan M Rolf et al.   BMC GENETICS

Visualization of results from genomic evaluations

(2010) J.B. Cole et al.   JOURNAL OF DAIRY SCIENCE

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Genomic Runs of Homozygosity Record Population History and Consanguinity

(2010) Mirna Kirin et al.   PLoS One

Runs of Homozygosity in European Populations

(2008) Ruth McQuillan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE