Dps Is a Universally Conserved Dual-Action DNA-Binding and Ferritin Protein

More than just a phase: the search for membraneless organelles in the bacterial cytoplasm

(2019) Elio A. Abbondanzieri et al.   CURRENT GENETICS

The Dps4 from Nostoc punctiforme ATCC 29133 is a member of His-type FOC containing Dps protein class that can be broadly found among cyanobacteria

(2019) Christoph Howe et al.   PLoS One

Structural diffusion properties of two atypical Dps from the cyanobacterium Nostoc punctiforme disclose interactions with ferredoxins and DNA

(2019) Vamsi K. Moparthi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

A Structure-Based Assembly Screen of Protein Cage Libraries in Living Cells: Experimentally Repacking a Protein–Protein Interface To Recover Cage Formation in an Assembly-Frustrated Mutant

(2018) Thomas A. Cornell et al.   BIOCHEMISTRY

Physical properties of DNA may direct the binding of nucleoid-associated proteins along the E. coli genome

(2018) Guoqing Liu et al.   MATHEMATICAL BIOSCIENCES

Protein Phase Separation: A New Phase in Cell Biology

(2018) Steven Boeynaems et al.   TRENDS IN CELL BIOLOGY

Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription

(2018) Richard Janissen et al.   CELL

The di-iron RIC (YtfE) protein of Escherichia coli interacts with the DNA-binding protein from starved cells (Dps) to diminish RIC-protein-mediated redox stress

(2018) Liliana S. O. Silva et al.   JOURNAL OF BACTERIOLOGY

Differential biochemical properties of three canonical Dps proteins from the cyanobacteriumNostoc punctiformesuggest distinct cellular functions

(2018) Christoph Howe et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A single molecule analysis of H-NS uncouples DNA binding affinity from DNA specificity

(2018) Ranjit Gulvady et al.   NUCLEIC ACIDS RESEARCH

The complex underpinnings of genetic background effects

(2018) Martin N. Mullis et al.   Nature Communications

Post-translational modification of nucleoid-associated proteins: an extra layer of functional modulation in bacteria?

(2018) Ivar W. Dilweg et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Editorial: Role of Iron in Bacterial Pathogenesis

(2018) Susu M. Zughaier et al.   Frontiers in Cellular and Infection Microbiology

SAXS Structural Studies of Dps from Deinococcus radiodurans Highlights the Conformation of the Mobile N-Terminal Extensions

(2017) Sandra P. Santos et al.   JOURNAL OF MOLECULAR BIOLOGY

Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis

(2017) Sunanda Margrett Williams et al.   Metallomics

OxyR-activated expression of Dps is important for Vibrio cholerae oxidative stress resistance and pathogenesis

(2017) Xiaoyun Xia et al.   PLoS One

The nucleoid protein Dps binds genomic DNA of Escherichia coli in a non-random manner

(2017) S. S. Antipov et al.   PLoS One

A Mutation Directs the Structural Switch of DNA Binding Proteins under Starvation to a Ferritin-like Protein Cage

(2017) Sunanda Margrett Williams et al.   STRUCTURE

The two Dps proteins, NpDps2 and NpDps5, are involved in light-induced oxidative stress tolerance in the N 2 -fixing cyanobacterium Nostoc punctiforme

(2016) Vamsi K. Moparthi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Overexpression of AhpC enhances stress tolerance and N 2 –fixation in Anabaena by upregulating stress responsive genes

(2016) Alok Kumar Shrivastava et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Role and regulation of ferritin-like proteins in iron homeostasis and oxidative stress survival of Caulobacter crescentus

(2016) Ivan Gonçalves de Castro Ferreira et al.   BIOMETALS

Facilitated Dissociation of a Nucleoid Protein from the Bacterial Chromosome

(2016) Nastaran Hadizadeh et al.   JOURNAL OF BACTERIOLOGY

Nucleoid clumping is dispensable for the Dps-dependent hydrogen peroxide resistance in Staphylococcus aureus

(2016) Yuri Ushijima et al.   MICROBIOLOGY-SGM

Transcription profile ofEscherichia coli: genomic SELEX search for regulatory targets of transcription factors

(2016) Akira Ishihama et al.   NUCLEIC ACIDS RESEARCH

Hysteresis in DNA compaction by Dps is described by an Ising model

(2016) Natalia N. Vtyurina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dps fromDeinococcus radiodurans: oligomeric forms of Dps1 with distinct cellular functions and Dps2 involved in metal storage

(2015) Sandra P. Santos et al.   FEBS Journal

A single gene all3940 (Dps) overexpression in Anabaena sp. PCC 7120 confers multiple abiotic stress tolerance via proteomic alterations

(2015) Om Prakash Narayan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The DNA-Binding Protein from Starved Cells (Dps) Utilizes Dual Functions To Defend Cells against Multiple Stresses

(2015) Vlad O. Karas et al.   JOURNAL OF BACTERIOLOGY

Compaction of bacterial genomic DNA: clarifying the concepts

(2015) Marc Joyeux   JOURNAL OF PHYSICS-CONDENSED MATTER

Dormant Bacillus spores protect their DNA in crystalline nucleoids against environmental stress

(2015) Christin Dittmann et al.   JOURNAL OF STRUCTURAL BIOLOGY

Ferritin family proteins and their use in bionanotechnology

(2015) Didi He et al.   New Biotechnology

Growth phase dependent changes in the structure and protein composition of nucleoid in Escherichia coli

(2015) AliAzam Talukder et al.   Science China-Life Sciences

Regulation of Bacterial DNA Packaging in Early Stationary Phase by Competitive DNA Binding of Dps and IHF

(2015) Sin Yi Lee et al.   Scientific Reports

A tale of tails: deciphering the contribution of terminal tails to the biochemical properties of two Dps proteins from Streptomyces coelicolor

(2014) Matthew D. Hitchings et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Nucleoid compaction by MrgAAsp56Ala/Glu60Aladoes not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages

(2014) Yuri Ushijima et al.   FEMS MICROBIOLOGY LETTERS

Intracellular Concentrations of 65 Species of Transcription Factors with Known Regulatory Functions in Escherichia coli

(2014) A. Ishihama et al.   JOURNAL OF BACTERIOLOGY

Kineococcus radiotolerans Dps forms a heteronuclear Mn–Fe ferroxidase center that may explain the Mn-dependent protection against oxidative stress

(2013) Matteo Ardini et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Structural Change of DNA Induced by Nucleoid Proteins: Growth Phase-Specific Fis and Stationary Phase-Specific Dps

(2013) Yuko T. Sato et al.   BIOPHYSICAL JOURNAL

Cellular and functional specificity among ferritin-like proteins in the multicellular cyanobacteriumNostoc punctiforme

(2013) Martin Ekman et al.   ENVIRONMENTAL MICROBIOLOGY

Differential regulation and activity against oxidative stress of Dps proteins in Bacillus cereus

(2013) Jwu-Ching Shu et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Campylobacter jejuni Dps Protein Binds DNA in the Presence of Iron or Hydrogen Peroxide

(2013) L. F. Huergo et al.   JOURNAL OF BACTERIOLOGY

The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium

(2013) James A. Imlay   NATURE REVIEWS MICROBIOLOGY

Novel Insights into E. coli’s Hexuronate Metabolism: KduI Facilitates the Conversion of Galacturonate and Glucuronate under Osmotic Stress Conditions

(2013) Monique Rothe et al.   PLoS One

Atomic Force Microscopy Analysis of the Role of Major DNA-Binding Proteins in Organization of the Nucleoid in Escherichia coli

(2013) Ryosuke L. Ohniwa et al.   PLoS One

Impact of Nutritional Factors on the Proteome of Intestinal Escherichia coli: Induction of OxyR-Dependent Proteins AhpF and Dps by a Lactose-Rich Diet

(2012) Monique Rothe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Campylobacter jejuni Dps Homologue Is Important forIn VitroBiofilm Formation and Cecal Colonization of Poultry and May Serve as a Protective Antigen for Vaccination

(2012) James R. Theoret et al.   Clinical and Vaccine Immunology

Control of optical bandgap energy and optical absorption coefficient by geometric parameters in sub-10 nm silicon-nanodisc array structure

(2012) Mohd Fairuz Budiman et al.   NANOTECHNOLOGY

Global regulation of gene expression by OxyR in an important human opportunistic pathogen

(2012) Qing Wei et al.   NUCLEIC ACIDS RESEARCH

The Iron-Binding Protein Dps2 Confers Peroxide Stress Resistance on Bacillus anthracis

(2011) W. Y. Tu et al.   JOURNAL OF BACTERIOLOGY

Structure and Mechanism of Iron Translocation by a Dps Protein fromMicrobacterium arborescens

(2011) Jelena Pesek et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Unveiling the Role of Dps in the Organization of Mycobacterial Nucleoid

(2011) Payel Ghatak et al.   PLoS One

Proteomic Analyses of Nucleoid-Associated Proteins in Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis, and Staphylococcus aureus

(2011) Ryosuke L. Ohniwa et al.   PLoS One

Rational disruption of the oligomerization of the mini-ferritin E. coli DPS through protein-protein interface mutation

(2011) Yu Zhang et al.   PROTEIN SCIENCE

Isolation of small RNA-binding proteins fromE. coli: Evidence for frequent interaction of RNAs with RNA polymerase

(2011) Nikolai Windbichler et al.   RNA Biology

Macromolecular crowding can account for RNase-sensitive constraint of bacterial nucleoid structure

(2010) Patricia L. Foley et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Heterologous expression of Anabaena PCC 7120 all3940 (a Dps family gene) protects Escherichia coli from nutrient limitation and abiotic stresses

(2010) Om Prakash Narayan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Structural characterization and biological implications of di-zinc binding in the ferroxidase center of Streptococcus pyogenes Dpr

(2010) Teemu Haikarainen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

CD and MCD Spectroscopic Studies of the Two Dps Miniferritin Proteins fromBacillus anthracis: Role of O2and H2O2Substrates in Reactivity of the Diiron Catalytic Centers

(2010) Jennifer K. Schwartz et al.   BIOCHEMISTRY

Ferritin in the field of nanodevices

(2010) Ichiro Yamashita et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

The Ferritin-like superfamily: Evolution of the biological iron storeman from a rubrerythrin-like ancestor

(2010) Simon C. Andrews   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding

(2010) Emilia Chiancone et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Bio-templated CdSe nanoparticle synthesis in a cage shaped protein, Listeria-Dps, and their two dimensional ordered array self-assembly

(2010) Mitsuhiro Okuda et al.   CHEMICAL COMMUNICATIONS

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

(2010) Douglas F Browning et al.   CURRENT OPINION IN MICROBIOLOGY

Thermosynechoccus elongatus DpsA binds Zn(II) at a unique three histidine-containing ferroxidase center and utilizes O2 as iron oxidant with very high efficiency, unlike the typical Dps proteins

(2010) Flaminia Alaleona et al.   FEBS Journal

The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

(2010) S. Stella et al.   GENES & DEVELOPMENT

Structural and Thermodynamic Characterization of Metal Ion Binding in Streptococcus suis Dpr

(2010) Teemu Haikarainen et al.   JOURNAL OF MOLECULAR BIOLOGY

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA

(2010) J. S. Graham et al.   NUCLEIC ACIDS RESEARCH

Dps-like proteins: structural and functional insights into a versatile protein family

(2009) Teemu Haikarainen et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Modification of PATase by L/F-transferase generates a ClpS-dependent N-end rule substrate in Escherichia coli

(2009) Robert L Ninnis et al.   EMBO JOURNAL

The C-terminal Region of HPNAP Activates Neutrophils and Promotes Their Adhesion to Endothelial Cells

(2009) Filippos Kottakis et al.   HELICOBACTER

orf4 of the Bacillus cereus sigB Gene Cluster Encodes a General Stress-Inducible Dps-Like Bacterioferritin

(2009) S.-W. Wang et al.   JOURNAL OF BACTERIOLOGY

The Legionella pneumophila Dps homolog is regulated by iron and involved in multiple stress tolerance

(2009) Ming-jia Yu et al.   JOURNAL OF BASIC MICROBIOLOGY

Crystal structures of Streptococcus pyogenes Dpr reveal a dodecameric iron-binding protein with a ferroxidase site

(2009) Teemu Haikarainen et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

From Proteome to Genome for Functional Characterization of pH-Dependent Outer Membrane Proteins inEscherichia coli

(2009) Lina Wu et al.   JOURNAL OF PROTEOME RESEARCH

Structural Basis for Iron Mineralization by Bacterioferritin

(2009) Allister Crow et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Dps protein of Escherichia coli is involved in copper homeostasis

(2009) Daniel Thieme et al.   MICROBIOLOGICAL RESEARCH

Interplay of cellular cAMP levels,  S activity and oxidative stress resistance in Escherichia coli

(2009) E. Barth et al.   MICROBIOLOGY-SGM

Induction of the ferritin gene (ftnA) ofEscherichia coliby Fe2+-Fur is mediated by reversal of H-NS silencing and is RyhB independent

(2009) Anjali Nandal et al.   MOLECULAR MICROBIOLOGY

ClpS is the recognition component forEscherichia colisubstrates of the N-end rule degradation pathway

(2009) Ronny Schmidt et al.   MOLECULAR MICROBIOLOGY

Streptomyces coelicolorDps-like proteins: differential dual roles in response to stress during vegetative growth and in nucleoid condensation during reproductive cell division

(2009) P. D. Facey et al.   MOLECULAR MICROBIOLOGY

Monitoring Biomimetic Platinum Nanocluster Formation Using Mass Spectrometry and Cluster-Dependent H2Production

(2008) Sebyung Kang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Periplasmic Cu,Zn superoxide dismutase and cytoplasmic Dps concur in protecting Salmonella enterica serovar Typhimurium from extracellular reactive oxygen species

(2008) Francesca Pacello et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

An Iron-Binding Protein, Dpr, Decreases Hydrogen Peroxide Stress and Protects Streptococcus pyogenes against Multiple Stresses

(2008) C.-C. Tsou et al.   INFECTION AND IMMUNITY

Apoferritin-Templated Yttrium Phosphate Nanoparticle Conjugates for Radioimmunotherapy of Cancers

(2008) Hong Wu et al.   JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY

Identification and Network of Outer Membrane Proteins Regulating Streptomysin Resistance inEscherichia coli

(2008) Hui Li et al.   JOURNAL OF PROTEOME RESEARCH

A human ferritin iron oxide nano-composite magnetic resonance contrast agent

(2008) Masaki Uchida et al.   MAGNETIC RESONANCE IN MEDICINE

Escherichia coli Dps interacts with DnaA protein to impede initiation: a model of adaptive mutation

(2008) Sundari Chodavarapu et al.   MOLECULAR MICROBIOLOGY

Selective repression by Fis and H-NS at theEscherichia coli dpspromoter

(2008) David C. Grainger et al.   MOLECULAR MICROBIOLOGY

Structural basis of the zinc- and terbium-mediated inhibition of ferroxidase activity in Dps ferritin-like proteins

(2008) Heli Havukainen et al.   PROTEIN SCIENCE

Functional Characterization of the Escherichia coli Fis–DNA Binding Sequence

(2007) Yongping Shao et al.   JOURNAL OF MOLECULAR BIOLOGY

Structural Studies on the Second Mycobacterium smegmatis Dps: Invariant and Variable Features of Structure, Assembly and Function

(2007) Siddhartha Roy et al.   JOURNAL OF MOLECULAR BIOLOGY