Major and minor U small nuclear RNAs genes characterization in a neotropical fish genome: Chromosomal remodeling and repeat units dispersion in Parodontidae

Chromosome Mapping of U2 snDNA in Species of Leptodactylus (Anura, Leptodactylidae)

(2021) Thiago Gazoni et al.   CYTOGENETIC AND GENOME RESEARCH

Evolutionary dynamics of 18S and 5S rDNA in autotriploid Carassius auratus

(2020) Liu Cao et al.   GENE

Chromosomal Diversification in Two Species of Pimelodus (Siluriformes: Pimelodidae): Comparative Cytogenetic Mapping of Multigene Families

(2020) Geovana de Cassia Malimpensa et al.   Zebrafish

Karyotypic Diversification in Two Megaleporinus Species (Characiformes, Anostomidae) Inferred from In Situ Localization of Repetitive DNA Sequences

(2020) Thais Aparecida Dulz et al.   Zebrafish

Unrevealing the Karyotypic Evolution and Cytotaxonomy of Armored Catfishes (Loricariinae) with Emphasis in Sturisoma, Loricariichthys, Loricaria, Proloricaria, Pyxiloricaria, and Rineloricaria

(2020) Fábio Hiroshi Takagui et al.   Zebrafish

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

(2020) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

Highly Rearranged Karyotypes and Multiple Sex Chromosome Systems in Armored Catfishes from the Genus Harttia (Teleostei, Siluriformes)

(2020) Geize Aparecida Deon et al.   Genes

Chromosome Mapping of H1 and H4 Histones in Parodontidae (Actinopterygii: Characiformes): Dispersed and/or Co-Opted Transposable Elements?

(2019) Josiane B. Traldi et al.   CYTOGENETIC AND GENOME RESEARCH

Cytogenetics and DNA barcode reveal an undescribed Apareiodon species (Characiformes: Parodontidae)

(2019) Emanoel Oliveira dos Santos et al.   GENETICS AND MOLECULAR BIOLOGY

DNA transposon invasion and microsatellite accumulation guide W chromosome differentiation in a Neotropical fish genome

(2019) Michelle Orane Schemberger et al.   CHROMOSOMA

RNA Splicing by the Spliceosome

(2019) Max E. Wilkinson et al.   Annual Review of Biochemistry

Chromosomal locations of U2 snDNA clusters in Megaleporinus, Leporinus and Schizodon (Characiformes: Anostomidae)

(2018) Júlia Chagas Ponzio et al.   BIOLOGIA

First chromosomal analysis in Gymnarchus niloticus (Gymnarchidae: Osteoglossiformes): insights into the karyotype evolution of this ancient fish order

(2018) Terumi Hatanaka et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Chromosomal Mapping of Repeat DNA in Bergiaria westermanni (Pimelodidae, Siluriformes): Localization of 45S rDNA in B Chromosomes

(2018) Geovana C. Malimpensa et al.   CYTOGENETIC AND GENOME RESEARCH

Co-located hAT transposable element and 5S rDNA in an interstitial telomeric sequence suggest the formation of Robertsonian fusion in armored catfish

(2018) Larissa Glugoski et al.   GENE

Conserved number of U2 snDNA sites in Piabina argentea, Piabarchus stramineus and two Bryconamericus species (Characidae, Stevardiinae)

(2018) Diovani Piscor et al.   Neotropical Ichthyology

Dynamics of tandemly repeated DNA sequences during evolution of diploid and tetraploid botiid loaches (Teleostei: Cobitoidea: Botiidae)

(2018) Alexandr Sember et al.   PLoS One

Physical mapping of repetitive DNA suggests 2n reduction in Amazon turtles Podocnemis (Testudines: Podocnemididae)

(2018) Manoella Gemaque Cavalcante et al.   PLoS One

Do multiple karyomorphs and population genetics of freshwater darter characines ( Apareiodon affinis ) indicate chromosomal speciation?

(2018) Viviane Demétrio do Nascimento et al.   ZOOLOGISCHER ANZEIGER

Dispersion of transposable elements and multigene families: Microstructural variation in Characidium (Characiformes: Crenuchidae) genomes

(2018) Marcela Baer Pucci et al.   GENETICS AND MOLECULAR BIOLOGY

Fragile sites, dysfunctional telomere and chromosome fusions: What is 5S rDNA role?

(2017) Alain Victor Barros et al.   GENE

Mechanistic insights into precursor messenger RNA splicing by the spliceosome

(2017) Yigong Shi   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Evolution of recombination rates between sex chromosomes

(2017) Deborah Charlesworth   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Third release of the plant rDNA database with updated content and information on telomere composition and sequenced plant genomes

(2017) Daniel Vitales et al.   PLANT SYSTEMATICS AND EVOLUTION

The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome

(2017) Ira W. Deveson et al.   TRENDS IN GENETICS

Evolutionary Dynamics of rDNAs and U2 Small Nuclear DNAs in Triportheus (Characiformes, Triportheidae): High Variability and Particular Syntenic Organization

(2017) Cassia Fernanda Yano et al.   Zebrafish

Karyotype and Mapping of Repetitive DNAs in the African Butterfly Fish Pantodon buchholzi, the Sole Species of the Family Pantodontidae

(2016) Petr Ráb et al.   CYTOGENETIC AND GENOME RESEARCH

Sequence analyses and chromosomal distribution of the Tc1/Mariner element in Parodontidae fish (Teleostei: Characiformes)

(2016) Michelle Orane Schemberger et al.   GENE

Evidence of birth-and-death evolution of 5S rRNA gene in Channa species (Teleostei, Perciformes)

(2016) Anindya Sundar Barman et al.   GENETICA

Chromosome Analyses of Apareiodon argenteus and Apareiodon davisi (Characiformes, Parodontidae): An Extensive Chromosomal Polymorphism of 45S and 5S Ribosomal DNAs

(2016) Josiane Baccarin Traldi et al.   Zebrafish

Highly Similar Morphologies Between Chromosomes Bearing U2 snRNA Gene Clusters in the Group Astyanax Baird and Girard, 1854 (Characiformes, Characidae): An Evolutionary Approach in Species with 2n = 36, 46, 48, and 50

(2016) Diovani Piscor et al.   Zebrafish

Genomic organization of repetitive DNAs highlights chromosomal evolution in the genus Clarias (Clariidae, Siluriformes)

(2016) Nuntiya Maneechot et al.   Molecular Cytogenetics

Repetitive DNA in eukaryotic genomes

(2015) Maria Assunta Biscotti et al.   CHROMOSOME RESEARCH

Chromosomal Mapping of Repetitive DNA Sequences in Five Species of Astyanax (Characiformes, Characidae) Reveals Independent Location of U1 and U2 snRNA Sites and Association of U1 snRNA and 5S rDNA

(2015) Duilio M.Z.A. Silva et al.   CYTOGENETIC AND GENOME RESEARCH

In situ Localization of (GATA)n and (TTAGGG)n Repeated DNAs and W Sex Chromosome Differentiation in Parodontidae (Actinopterygii: Characiformes)

(2015) Kaline Ziemniczak et al.   CYTOGENETIC AND GENOME RESEARCH

A New Class of SINEs with snRNA Gene-Derived Heads

(2015) Kenji K. Kojima   Genome Biology and Evolution

Structure and Organization of the Engraulidae Family U2 snRNA: An Evolutionary Model Gene?

(2015) Hicham Chairi et al.   JOURNAL OF MOLECULAR EVOLUTION

U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals

(2015) Aurélien J. Doucet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Repetitive DNA Sequences and Evolution of ZZ/ZW Sex Chromosomes in Characidium (Teleostei: Characiformes)

(2015) Priscilla Cardim Scacchetti et al.   PLoS One

Molecular Cytogenetic Analysis of the European Hake Merluccius merluccius (Merlucciidae, Gadiformes): U1 and U2 snRNA Gene Clusters Map to the Same Location

(2015) Daniel García-Souto et al.   PLoS One

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Comparative Chromosome Mapping of U2 snRNA and 5S rRNA Genes in Gymnotus Species (Gymnotiformes, Gymnotidae): Evolutionary Dynamics and Sex Chromosome Linkage in G. pantanal

(2014) Ricardo Utsunomia et al.   CYTOGENETIC AND GENOME RESEARCH

U1 snDNA clusters in grasshoppers: chromosomal dynamics and genomic organization

(2014) A Anjos et al.   HEREDITY

Construction and Characterization of a Repetitive DNA Library in Parodontidae (Actinopterygii: Characiformes): A Genomic and Evolutionary Approach to the Degeneration of the W Sex Chromosome

(2014) Michelle Orane Schemberger et al.   Zebrafish

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

A meta-analysis of the genomic and transcriptomic composition of complex life

(2013) Gangiang Liu et al.   CELL CYCLE

Twenty Years of Physical Mapping of Major Ribosomal RNA Genes across the Teleosts: A Review of Research

(2013) E. Gornung   CYTOGENETIC AND GENOME RESEARCH

Non-coding RNAs as direct and indirect modulators of epigenetic regulation

(2013) Veronica J Peschansky et al.   Epigenetics

Pseudogenes: Pseudo or Real Functional Elements?

(2013) Wen Li et al.   Journal of Genetics and Genomics

The 5S rDNA High Dynamism in Diplodus sargus is a Transposon-Mediated Mechanism. Comparison with Other Multigene Families and Sparidae Species

(2013) Manuel A. Merlo et al.   JOURNAL OF MOLECULAR EVOLUTION

Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)

(2013) Susana S. R. Milhomem et al.   PLoS One

A Superfamily of DNA Transposons Targeting Multicopy Small RNA Genes

(2013) Kenji K. Kojima et al.   PLoS One

Karyotype and cytogenetic mapping of 9 classes of repetitive DNAs in the genome of the naked catfish Mystus bocourti (Siluriformes, Bagridae)

(2013) Weerayuth Supiwong et al.   Molecular Cytogenetics

First approach to studying the genetics of the meagre (Argyrosomus regius; Asso, 1801) using three multigene families

(2012) Manuel Alejandro Merlo et al.   AQUACULTURE RESEARCH

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Genetic characterization of Plectorhinchus mediterraneus yields important clues about genome organization and evolution of multigene families

(2012) Manuel A Merlo et al.   BMC GENETICS

Genomic organization and comparative chromosome mapping of the U1 snRNA gene in cichlid fish, with an emphasis in Oreochromis niloticus

(2012) D. C. Cabral-de-Mello et al.   CHROMOSOME RESEARCH

Differentiation of repetitive DNA sites and sex chromosome systems reveal closely related group in Parodontidae (Actinopterygii: Characiformes)

(2012) Michelle Orane Schemberger et al.   GENETICA

Sex chromosome system ZZ/ZW in Apareiodon hasemani Eigenmann, 1916 (Characiformes, Parodontidae) and a derived chromosomal region

(2012) Elisangela Bellafronte et al.   GENETICS AND MOLECULAR BIOLOGY

The significant other: splicing by the minor spliceosome

(2012) Janne J. Turunen et al.   Wiley Interdisciplinary Reviews-RNA

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Are ribosomal DNA clusters rearrangement hotspots? A case study in the genus Mus (Rodentia, Muridae)

(2011) Benoîte Cazaux et al.   BMC EVOLUTIONARY BIOLOGY

Analysis of three multigene families as useful tools in species characterization of two closely-related species, Dicentrarchus labrax, Dicentrarchus punctatus and their hybrids

(2011) Manuel Alejandro Merlo et al.   GENES & GENETIC SYSTEMS

Eukaryotic 5S rRNA biogenesis

(2011) Martin Ciganda et al.   Wiley Interdisciplinary Reviews-RNA

Chromosomal mapping of the major and minor ribosomal genes, (GATA)n and U2 snRNA gene by double-colour FISH in species of the Batrachoididae family

(2010) María Úbeda-Manzanaro et al.   GENETICA

Satellite DNA and chromosomes in Neotropical fishes: methods, applications and perspectives

(2010) M. R. Vicari et al.   JOURNAL OF FISH BIOLOGY

Chromosomal markers in Parodontidae: an analysis of new and reviewed data with phylogenetic inferences

(2010) Elisangela Bellafronte et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Spliceosome Structure and Function

(2010) C. L. Will et al.   Cold Spring Harbor Perspectives in Biology

NOMENCLATURE FOR CENTROMERIC POSITION ON CHROMOSOMES

(2009) ALBERT LEVAN et al.   HEREDITAS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Transcriptional regulation of human small nuclear RNA genes

(2008) G JAWDEKAR et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

Molecular mechanisms of chromosomal rearrangement during primate evolution

(2008) Hildegard Kehrer-Sawatzki et al.   CHROMOSOME RESEARCH

Evolution of Spliceosomal snRNA Genes in Metazoan Animals

(2008) Manuela Marz et al.   JOURNAL OF MOLECULAR EVOLUTION

Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components

(2008) Marcela Dávila López et al.   NUCLEIC ACIDS RESEARCH

The Eukaryotic Genome as an RNA Machine

(2008) P. P. Amaral et al.   SCIENCE