Comparative transcriptomic analysis unveils a network of energy reallocation in Litopenaeus vannamei responsive to heat-stress

Combined hypoxia and high temperature affect differentially the response of antioxidant enzymes, glutathione and hydrogen peroxide in the white shrimp Litopenaeus vannamei

(2021) Paulina Estrada-Cárdenas et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Mitochondrial manganese superoxide dismutase from the shrimp Litopenaeus vannamei: Molecular characterization and effect of high temperature, hypoxia and reoxygenation on expression and enzyme activity

(2020) Ricardo González-Ruiz et al.   JOURNAL OF THERMAL BIOLOGY

Immune response to acute heat stress in the intestine of the red swamp crayfish, Procambarus clarkii

(2020) Kun Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Temperature and concentration of ZnO particles affect life history traits and oxidative stress in Daphnia magna

(2020) Paweena Sanpradit et al.   AQUATIC TOXICOLOGY

Litopenaeus vannamei oxygen consumption and HSP gene expression at cyclic conditions of hyperthermia and hypoxia

(2020) Sergio Alan Ulaje et al.   JOURNAL OF THERMAL BIOLOGY

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Temperature increase altered Daphnia community structure in artificially heated lakes: a potential scenario for a warmer future

(2020) Marcin K. Dziuba et al.   Scientific Reports

Full-length transcriptome sequences of ridgetail white prawn Exopalaemon carinicauda provide insight into gene expression dynamics during thermal stress

(2020) Kunpeng Shi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Penaeid shrimp genome provides insights into benthic adaptation and frequent molting

(2019) Xiaojun Zhang et al.   Nature Communications

Extreme temperature impairs growth and productivity in a common tropical marine copepod

(2019) Nam X. Doan et al.   Scientific Reports

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Oxidative stress, immunological response, and heat shock proteins induction in the Chinese Mitten Crab, Eriocheir sinensis following avermectin exposure

(2019) Yuhang Hong et al.   ENVIRONMENTAL TOXICOLOGY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Effect of high temperature stress on heat shock protein expression and antioxidant enzyme activity of two morphs of the mud crab Scylla paramamosain

(2018) Zi-Ming Liu et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Identification of microRNAs with heat stress responsive and immune properties in Marsupenaeus japonicus based on next-generation sequencing and bioinformatics analysis: Essential regulators in the heat stress-host interactions

(2018) Jinbin Zheng et al.   FISH & SHELLFISH IMMUNOLOGY

Protein Synthesis Initiation in Eukaryotic Cells

(2018) William C. Merrick et al.   Cold Spring Harbor Perspectives in Biology

Elevated temperature disrupts the mucosal structure and induces an immune response in the intestine of whiteleg shrimp Litopenaeus vannamei (Boone, 1931) (Decapoda: Dendrobranchiata: Penaeidae)

(2018) Yafei Duan et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Thermal stress and energy metabolism in two circumtropical decapod crustaceans: Responses to acute temperature events

(2018) Carolina Madeira et al.   MARINE ENVIRONMENTAL RESEARCH

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Heat Shock Protein 40 (HSP40) in Pacific White Shrimp (Litopenaeus vannamei): Molecular Cloning, Tissue Distribution and Ontogeny, Response to Temperature, Acidity/Alkalinity and Salinity Stresses, and Potential Role in Ovarian Development

(2018) Ting Chen et al.   Frontiers in Physiology

Comparative transcriptome analysis provides comprehensive insights into the heat stress response of Marsupenaeus japonicus

(2018) Jinbin Zheng et al.   AQUACULTURE

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Thermal stress depletes energy reserves in Drosophila

(2016) Peter Klepsatel et al.   Scientific Reports

Energy response of swimming crab Portunus trituberculatus to thermal variation: Implication for crab transport method

(2015) Yunliang Lu et al.   AQUACULTURE

The detoxification process, bioaccumulation and damage effect in juvenile white shrimp Litopenaeus vannamei exposed to chrysene

(2015) Xianyun Ren et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

ROS Function in Redox Signaling and Oxidative Stress

(2014) Michael Schieber et al.   CURRENT BIOLOGY

Effects of temperature on complexes I and II mediated respiration, ROS generation and oxidative stress status in isolated gill mitochondria of the mud crab Scylla serrata

(2014) Biswaranjan Paital et al.   JOURNAL OF THERMAL BIOLOGY

Role of redox metabolism for adaptation of aquatic animals to drastic changes in oxygen availability

(2013) Alexis F. Welker et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates

(2012) Inna M. Sokolova et al.   MARINE ENVIRONMENTAL RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Effects of temperature on cellular and biochemical parameters in the crab Carcinus aestuarii (Crustacea, Decapoda)

(2011) Valerio Matozzo et al.   MARINE ENVIRONMENTAL RESEARCH

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Translational Regulation of Gene Expression during Conditions of Cell Stress

(2010) Keith A. Spriggs et al.   MOLECULAR CELL

Small heat shock protein Hsp27 protects myosin S1 from heat-induced aggregation, but not from thermal denaturation and ATPase inactivation

(2008) Denis I. Markov et al.   FEBS LETTERS

Thresholds of hypoxia for marine biodiversity

(2008) R. Vaquer-Sunyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA