Full-length transcriptome sequences of ridgetail white prawn Exopalaemon carinicauda provide insight into gene expression dynamics during thermal stress

Marine heatwaves in a changing climate

(2019) Michael G. Jacox   NATURE

Influence of temperature and size on menthol anaesthesia in Chinese grass shrimp Palaemonetes sinensis (Sollaud, 1911)

(2018) Yingdong Li et al.   AQUACULTURE RESEARCH

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D

(2018) Piroon Jenjaroenpun et al.   NUCLEIC ACIDS RESEARCH

Simulated Marine Heat Wave Alters Abundance and Structure of Vibrio Populations Associated with the Pacific Oyster Resulting in a Mass Mortality Event

(2018) Timothy J. Green et al.   MICROBIAL ECOLOGY

Transcriptome analysis of Kuruma shrimp ( Marsupenaeus japonicus ) hepatopancreas in response to white spot syndrome virus (WSSV) under experimental infection

(2017) Shengping Zhong et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis of the hepatopancreas in Exopalaemon carinicauda infected with an AHPND-causing strain of Vibrio parahaemolyticus

(2017) Qianqian Ge et al.   FISH & SHELLFISH IMMUNOLOGY

Advantages of genome sequencing by long-read sequencer using SMRT technology in medical area

(2017) Kazuma Nakano et al.   Human Cell

Effects of temperature change on physiological and biochemical responses of Yesso scallop, Patinopecten yessoensis

(2016) Weiwei Jiang et al.   AQUACULTURE

On the study of microbial transcriptomes using second- and third-generation sequencing technologies

(2016) Sang Chul Choi   JOURNAL OF MICROBIOLOGY

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Transcriptome Analysis of the Hepatopancreas in the Pacific White Shrimp (Litopenaeus vannamei) under Acute Ammonia Stress

(2016) Xia Lu et al.   PLoS One

Effects of crude oil exposure and elevated temperature on the liver transcriptome of polar cod (Boreogadus saida)

(2015) Øivind Andersen et al.   AQUATIC TOXICOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Linking transcriptional responses to organismal tolerance reveals mechanisms of thermal sensitivity in a mesothermal endangered fish

(2015) Lisa M. Komoroske et al.   MOLECULAR ECOLOGY

Transcriptome analysis provides insights into the regulatory function of alternative splicing in antiviral immunity in grass carp (Ctenopharyngodon idella)

(2015) Quanyuan Wan et al.   Scientific Reports

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

Immune responses ofLitopenaeus vannameito thermal stress: a comparative study of shrimp in freshwater and seawater conditions

(2014) Xuying Jia et al.   MARINE AND FRESHWATER BEHAVIOUR AND PHYSIOLOGY

Transcriptome analysis of eyestalk and hemocytes in the ridgetail white prawn Exopalaemon carinicauda: assembly, Annotation and Marker Discovery

(2014) Jitao Li et al.   MOLECULAR BIOLOGY REPORTS

An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome

(2013) Marco Ferrarini et al.   BMC GENOMICS

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs

(2012) Musa A Hassan et al.   BMC GENOMICS

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Molecular characterization and expression analysis of heat shock proteins 40, 70 and 90 from kuruma shrimp Marsupenaeus japonicus

(2011) Threechada Danwattananusorn et al.   FISHERIES SCIENCE

Three heat shock proteins are essential for rotifer thermotolerance

(2011) Hilary A. Smith et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Second-generation high-throughput forward genetic screen in mice to isolate subtle behavioral mutants

(2011) V. Kumar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hematodinium infections in cultured ridgetail white prawns, Exopalaemon carinicauda, in eastern China

(2010) Wenjun Xu et al.   AQUACULTURE

Effect of high water temperature on mortality, immune response and viral replication of WSSV-infected Marsupenaeus japonicus juveniles and adults

(2010) Xin-xin You et al.   AQUACULTURE

Quantitative analysis of temperature, salinity and pH on WSSV proliferation in Chinese shrimp Fenneropenaeus chinensis by real-time PCR

(2010) Huan Gao et al.   AQUACULTURE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Hemocyanin from shrimp Litopenaeus vannamei shows hemolytic activity

(2009) Yueling Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

(2009) J. Muller et al.   NUCLEIC ACIDS RESEARCH