Toward the explainability, transparency, and universality of machine learning for behavioral classification in neuroscience

The next generation of neuroscientists needs to learn how to code, and we need new ways to teach them

(2022) Ashley L. Juavinett   NEURON

Automated procedure to assess pup retrieval in laboratory mice

(2022) Carmen Winters et al.   Scientific Reports

DeepLabStream enables closed-loop behavioral experiments using deep learning-based markerless, real-time posture detection

(2021) Jens F. Schweihoff et al.   Communications Biology

Geometric deep learning enables 3D kinematic profiling across species and environments

(2021) Timothy W. Dunn et al.   NATURE METHODS

Action detection using a neural network elucidates the genetics of mouse grooming behavior

(2021) Brian Q Geuther et al.   eLife

B-SOiD, an open-source unsupervised algorithm for identification and fast prediction of behaviors

(2021) Alexander I. Hsu et al.   Nature Communications

DeepEthogram, a machine learning pipeline for supervised behavior classification from raw pixels

(2021) James P Bohnslav et al.   eLife

Two Distinct Types of Eye-Head Coupling in Freely Moving Mice

(2020) Arne F. Meyer et al.   CURRENT BIOLOGY

Facial expressions of emotion states and their neuronal correlates in mice

(2020) Nejc Dolensek et al.   SCIENCE

Rage Against the Machine: Advancing the study of aggression ethology via machine learning.

(2020) Nastacia L. Goodwin et al.   PSYCHOPHARMACOLOGY

Real-time, low-latency closed-loop feedback using markerless posture tracking

(2020) Gary A Kane et al.   eLife

Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis

(2019) Jerneja Rudolf et al.   Scientific Reports

DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning

(2019) Jacob M Graving et al.   eLife

Computational Neuroethology: A Call to Action

(2019) Sandeep Robert Datta et al.   NEURON

A Shared Vision for Machine Learning in Neuroscience

(2018) Mai-Anh T. Vu et al.   JOURNAL OF NEUROSCIENCE

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

(2018) Alexander Mathis et al.   NATURE NEUROSCIENCE

Fast animal pose estimation using deep neural networks

(2018) Talmo D. Pereira et al.   NATURE METHODS

Explanation in artificial intelligence: Insights from the social sciences

(2018) Tim Miller   ARTIFICIAL INTELLIGENCE

Neuroscience Needs Behavior: Correcting a Reductionist Bias

(2017) John W. Krakauer et al.   NEURON

Computational Analysis of Behavior

(2016) S.E. Roian Egnor et al.   Annual Review of Neuroscience

Proposed Training to Meet Challenges of Large-Scale Data in Neuroscience

(2016) William Grisham et al.   Frontiers in Neuroinformatics

The Resource Identification Initiative: A cultural shift in publishing

(2015) Anita Bandrowski et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Mapping Sub-Second Structure in Mouse Behavior

(2015) Alexander B. Wiltschko et al.   NEURON

Sexually divergent expression of active and passive conditioned fear responses in rats

(2015) Tina M Gruene et al.   eLife

Toward a Science of Computational Ethology

(2014) David J. Anderson et al.   NEURON

Discovery of Brainwide Neural-Behavioral Maps via Multiscale Unsupervised Structure Learning

(2014) J. T. Vogelstein et al.   SCIENCE

Sex differences in stress-induced social withdrawal: role of brain derived neurotrophic factor in the bed nucleus of the stria terminalis

(2014) Gian D. Greenberg et al.   Frontiers in Behavioral Neuroscience

A call for transparent reporting to optimize the predictive value of preclinical research

(2012) Story C. Landis et al.   NATURE

JAABA: interactive machine learning for automatic annotation of animal behavior

(2012) Mayank Kabra et al.   NATURE METHODS

Computing Has Changed Biology--Biology Education Must Catch Up

(2009) P. Pevzner et al.   SCIENCE

Removing Obstacles in Neuroscience Drug Discovery: The Future Path for Animal Models

(2008) Athina Markou et al.   NEUROPSYCHOPHARMACOLOGY