Genomic insights into the diversity of non-coding RNAs in Bacillus cereus sensu lato

BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access

(2021) Adrian Sven Geissler et al.   Microbial Genomics

The CRISPR-Cas systems were selectively inactivated during evolution of Bacillus cereus group for adaptation to diverse environments

(2020) Ziqiang Zheng et al.   ISME Journal

Rap-Phr systems from pAW63 and pHT8-1 plasmids act together to regulate sporulation in the Bacillus thuringiensis kurstaki HD73 strain

(2020) Priscilla Cardoso et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A structure-based nomenclature for Bacillus thuringiensis and other bacteria-derived pesticidal proteins

(2020) Neil Crickmore et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

ncRDeep: Non-coding RNA classification with convolutional neural network

(2020) Tuvshinbayar Chantsalnyam et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

The Many Facets of the Small Non-coding RNA RsaE (RoxS) in Metabolic Niche Adaptation of Gram-Positive Bacteria

(2019) Gabriella Marincola et al.   JOURNAL OF MOLECULAR BIOLOGY

Diversity of Bacillus cereus sensu lato mobilome

(2019) Nancy Fayad et al.   BMC GENOMICS

Diversity of the Rap–Phr quorum-sensing systems in the Bacillus cereus group

(2019) Priscilla de F. Cardoso et al.   CURRENT GENETICS

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Function of miR825 and miR825* as Negative Regulators in Bacillus cereus AR156-elicited Systemic Resistance to Botrytis cinerea in Arabidopsis thaliana

(2019) Pingping Nie et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Characterization of 6S RNA in the Lyme disease spirochete

(2019) Dan Drecktrah et al.   MOLECULAR MICROBIOLOGY

Long Noncoding RNAs and Repetitive Elements: Junk or Intimate Evolutionary Partners?

(2019) Hyunmin Lee et al.   TRENDS IN GENETICS

Bacterial RNA Biology on a Genome Scale

(2018) Jens Hör et al.   MOLECULAR CELL

Genetic Analysis of Human Norovirus Strains in Japan in 2016–2017

(2018) Koo Nagasawa et al.   Frontiers in Microbiology

Whole-Genome Analysis of Bacillus thuringiensis Revealing Partial Genes as a Source of Novel Cry Toxins

(2018) Muhammad Sajid et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional annotation and distribution overview of RNA families in 27 Streptococcus agalactiae genomes

(2018) Ivan Rodrigo Wolf et al.   BMC GENOMICS

Identification and Expression of Small Non-Coding RNA, L10-Leader, in Different Growth Phases of Streptococcus mutans

(2018) Li Xia et al.   Nucleic Acid Therapeutics

Epsc Involved in the Encoding of Exopolysaccharides Produced by Bacillus amyloliquefaciens FZB42 Act to Boost the Drought Tolerance of Arabidopsis thaliana

(2018) Xiang Lu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genomes OnLine database (GOLD) v.7: updates and new features

(2018) Supratim Mukherjee et al.   NUCLEIC ACIDS RESEARCH

A plasmid-borne Rap-Phr system regulates sporulation of Bacillus thuringiensis in insect larvae

(2017) Fernanda Fazion et al.   ENVIRONMENTAL MICROBIOLOGY

Small RNA-mediated Cry toxin silencing allows Bacillus thuringiensis to evade Caenorhabditis elegans avoidance behavioral defenses

(2017) Donghai Peng et al.   NUCLEIC ACIDS RESEARCH

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

Evolutionary processes and environmental factors underlying the genetic diversity and lifestyles of Bacillus cereus group bacteria

(2017) Rafael Patiño-Navarrete et al.   RESEARCH IN MICROBIOLOGY

nRC: non-coding RNA Classifier based on structural features

(2017) Antonino Fiannaca et al.   BioData Mining

sRNA-mediated activation of gene expression by inhibition of 5'-3’ exonucleolytic mRNA degradation

(2017) Sylvain Durand et al.   eLife

A Long Journey Ahead: Long Non-coding RNAs in Bacterial Infections

(2017) Jennifer zur Bruegge et al.   Frontiers in Cellular and Infection Microbiology

Genetic diversity and functional characterization of endophytic Bacillus thuringiensis isolates from the North Western Indian Himalayas

(2016) Pankaj Kumar Mishra et al.   ANNALS OF MICROBIOLOGY

Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression

(2016) Ruben A. T. Mars et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

TheyjdFriboswitch candidate regulates gene expression by binding diverse azaaromatic compounds

(2016) Sanshu Li et al.   RNA

Nematicidal spore-forming Bacilli share similar virulence factors and mechanisms

(2016) Ziqiang Zheng et al.   Scientific Reports

Cyclic di-GMP contributes to adaption and virulence of Bacillus thuringiensis through a riboswitch-regulated collagen adhesion protein

(2016) Qing Tang et al.   Scientific Reports

Anthrax Pathogenesis

(2015) Mahtab Moayeri et al.   Annual Review of Microbiology

Identification of differentially expressed microRNAs between Bacillus thuringiensis Cry1Ab-resistant and -susceptible strains of Ostrinia furnacalis

(2015) Li-Na Xu et al.   Scientific Reports

Genomic insights into the taxonomic status of the Bacillus cereus group

(2015) Yang Liu et al.   Scientific Reports

jvenn: an interactive Venn diagram viewer

(2014) Philippe Bardou et al.   BMC BIOINFORMATICS

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Complete genome sequence of Bacillus thuringiensis YBT-1518, a typical strain with high toxicity to nematodes

(2013) Pengxia Wang et al.   JOURNAL OF BIOTECHNOLOGY

Emerging Functions for the Staphylococcus aureus RNome

(2013) Julien Guillet et al.   PLoS Pathogens

Bacillus thuringiensis Is an Environmental Pathogen and Host-Specificity Has Developed as an Adaptation to Human-Generated Ecological Niches

(2013) Ronaldo Argôlo-Filho et al.   Insects

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

(2012) Omri Wurtzel et al.   Molecular Systems Biology

Evolution of genome base composition and genome size in bacteria

(2012) Hiromi Nishida   Frontiers in Microbiology

Bacillus anthracis: Molecular taxonomy, population genetics, phylogeny and patho-evolution

(2011) Paola Pilo et al.   INFECTION GENETICS AND EVOLUTION

Determination of Plasmid Copy Number Reveals the Total Plasmid DNA Amount Is Greater than the Chromosomal DNA Amount in Bacillus thuringiensis YBT-1520

(2011) Chunying Zhong et al.   PLoS One

Small RNAs in the Genus Clostridium

(2011) Y. Chen et al.   mBio

Extended and global phylogenetic view of the Bacillus cereus group population by combination of MLST, AFLP, and MLEE genotyping data

(2010) Nicolas J. Tourasse et al.   FOOD MICROBIOLOGY

RNAs: regulators of bacterial virulence

(2010) Jonas Gripenland et al.   NATURE REVIEWS MICROBIOLOGY

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

What SetsBacillus anthracisApart from OtherBacillusSpecies?

(2009) Anne-Brit Kolstø et al.   Annual Review of Microbiology

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

Ecological diversification in the Bacillus cereus Group

(2007) Marie-Hélène Guinebretière et al.   ENVIRONMENTAL MICROBIOLOGY