Systematic Transcriptome Wide Analysis of lncRNA-miRNA Interactions

miRcode: a map of putative microRNA target sites in the long non-coding transcriptome

(2012) Ashwini Jeggari et al.   BIOINFORMATICS

Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs

(2012) Saakshi Jalali et al.   Biology Direct

Conceptual approaches for lncRNA drug discovery and future strategies

(2012) Deeksha Bhartiya et al.   Expert Opinion on Drug Discovery

Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci

(2012) Satish Sati et al.   NUCLEIC ACIDS RESEARCH

Reverse Genetics Screen in Zebrafish Identifies a Role of miR-142a-3p in Vascular Development and Integrity

(2012) Mukesh Kumar Lalwani et al.   PLoS One

Analytical aspects of microRNA in diagnostics: A review

(2011) Mariàngels de Planell-Saguer et al.   ANALYTICA CHIMICA ACTA

Circulating MicroRNAs

(2011) Stephan Fichtlscherer et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA

(2011) Marcella Cesana et al.   CELL

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

miR-196 regulates axial patterning and pectoral appendage initiation

(2011) Xinjun He et al.   DEVELOPMENTAL BIOLOGY

Xist regulation and function eXplored

(2011) Daphne B. Pontier et al.   HUMAN GENETICS

In Vivo and Transcriptome-wide Identification of RNA Binding Protein Target Sites

(2011) Anna-Carina Jungkamp et al.   MOLECULAR CELL

Initial impact of the sequencing of the human genome

(2011) Eric S. Lander   NATURE

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

(2011) Yingrui Li et al.   NATURE BIOTECHNOLOGY

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

(2011) Qi Liao et al.   NUCLEIC ACIDS RESEARCH

MicroRNAs in Development and Disease

(2011) Danish Sayed et al.   PHYSIOLOGICAL REVIEWS

Long noncoding RNA in genome regulation

(2011) Tiffany Hung et al.   RNA Biology

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

HOTAIR: Flight of noncoding RNAs in cancer metastasis

(2010) Yue Wan et al.   CELL CYCLE

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

(2010) Rajnish A. Gupta et al.   NATURE

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Small RNA sorting: matchmaking for Argonautes

(2010) Benjamin Czech et al.   NATURE REVIEWS GENETICS

MiRNA–miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features

(2010) Juan Xu et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

lncRNAdb: a reference database for long noncoding RNAs

(2010) Paulo P. Amaral et al.   NUCLEIC ACIDS RESEARCH

The UCSC Genome Browser database: update 2011

(2010) P. A. Fujita et al.   NUCLEIC ACIDS RESEARCH

CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer

(2010) Jiayi Wang et al.   NUCLEIC ACIDS RESEARCH

An Integrative Approach to Genomic Introgression Mapping

(2010) Andrew J. Severin et al.   PLANT PHYSIOLOGY

A Collection of Target Mimics for Comprehensive Analysis of MicroRNA Function in Arabidopsis thaliana

(2010) Marco Todesco et al.   PLoS Genetics

The next-generation sequencing technology and application

(2010) Xiaoguang Zhou et al.   Protein & Cell

MicroRNA-125b is a novel negative regulator of p53

(2009) M. T.N. Le et al.   GENES & DEVELOPMENT

Small but influential: the role of microRNAs on gene regulatory network and 3′UTR evolution

(2009) Rui Zhang et al.   Journal of Genetics and Genomics

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

High miR-196a levels promote the oncogenic phenotype of colorectal cancer cells

(2009) Carl Christoph Schimanski et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

miRecords: an integrated resource for microRNA-target interactions

(2008) F. Xiao et al.   NUCLEIC ACIDS RESEARCH

MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control

(2008) Yi Zhao et al.   TRENDS IN GENETICS