A random priming amplification method for whole genome sequencing of SARS-CoV-2 virus
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Title
A random priming amplification method for whole genome sequencing of SARS-CoV-2 virus
Authors
Keywords
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Journal
BMC GENOMICS
Volume 23, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-05-30
DOI
10.1186/s12864-022-08563-z
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Note: Only part of the references are listed.- Comprehensive analysis of genomic diversity of SARS-CoV-2 in different geographic regions of India: an endeavour to classify Indian SARS-CoV-2 strains on the basis of co-existing mutations
- (2021) Rakesh Sarkar et al. ARCHIVES OF VIROLOGY
- Existing antiviral options against SARS-CoV-2 replication in COVID-19 patients
- (2021) Reza Ghanbari et al. Future Microbiology
- Fast-spreading U.K. virus variant raises alarms
- (2021) Kai Kupferschmidt SCIENCE
- New variant of SARS-CoV-2 in UK causes surge of COVID-19
- (2021) Tony Kirby Lancet Respiratory Medicine
- Preliminary report of an outbreak of SARS-CoV-2 in mink and mink farmers associated with community spread, Denmark, June to November 2020
- (2021) Helle Daugaard Larsen et al. Eurosurveillance
- Quantifying the transmission advantage associated with N501Y substitution of SARS-CoV-2 in the UK: an early data-driven analysis
- (2021) Shi Zhao et al. JOURNAL OF TRAVEL MEDICINE
- SARS-CoV-2 evolution during treatment of chronic infection
- (2021) Steven A. Kemp et al. NATURE
- SARS-CoV-2 501Y.V2 escapes neutralization by South African COVID-19 donor plasma
- (2021) Constantinos Kurt Wibmer et al. NATURE MEDICINE
- Human rhinovirus infection blocks SARS-CoV-2 replication within the respiratory epithelium: implications for COVID-19 epidemiology
- (2021) Kieran Dee et al. JOURNAL OF INFECTIOUS DISEASES
- Whole-genome sequencing of SARS-CoV-2 reveals the detection of G614 variant in Pakistan
- (2021) Massab Umair et al. PLoS One
- SARS-CoV-2 evolution and vaccines: cause for concern?
- (2021) Thomas C Williams et al. Lancet Respiratory Medicine
- Recombinant SARS-CoV-2 Genomes Circulated at Low Levels Over The First Year of The Pandemic
- (2021) David VanInsberghe et al. Virus Evolution
- 2019 novel coronavirus is undergoing active recombination
- (2020) Huiguang Yi CLINICAL INFECTIOUS DISEASES
- Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR
- (2020) Victor M Corman et al. Eurosurveillance
- Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding
- (2020) Roujian Lu et al. LANCET
- SARS-CoV-2 Viral Load in Clinical Samples from Critically Ill Patients
- (2020) Yongbo Huang et al. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE
- Potential preanalytical and analytical vulnerabilities in the laboratory diagnosis of coronavirus disease 2019 (COVID-19)
- (2020) Giuseppe Lippi et al. CLINICAL CHEMISTRY AND LABORATORY MEDICINE
- Quantitative Detection and Viral Load Analysis of SARS-CoV-2 in Infected Patients
- (2020) Fengting Yu et al. CLINICAL INFECTIOUS DISEASES
- RT-qPCR Testing of SARS-CoV-2: A Primer
- (2020) Stephen A. Bustin et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens
- (2020) David Kim et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Large-scale, in-house production of viral transport media to support SARS-CoV-2 PCR testing in a multi-hospital healthcare network during the COVID-19 pandemic
- (2020) Kenneth P. Smith et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Virological assessment of hospitalized patients with COVID-2019
- (2020) Roman Wölfel et al. NATURE
- Presymptomatic SARS-CoV-2 Infections and Transmission in a Skilled Nursing Facility
- (2020) Melissa M. Arons et al. NEW ENGLAND JOURNAL OF MEDICINE
- Asymptomatic and Presymptomatic SARS-CoV-2 Infections in Residents of a Long-Term Care Skilled Nursing Facility — King County, Washington, March 2020
- (2020) Anne Kimball et al. MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT
- Distribution of SARS-CoV-2 PCR Cycle Threshold Values Provide Practical Insight Into Overall and Target-Specific Sensitivity Among Symptomatic Patients
- (2020) Blake W Buchan et al. AMERICAN JOURNAL OF CLINICAL PATHOLOGY
- Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus
- (2020) Bette Korber et al. CELL
- Optimization of primer sets and detection protocols for SARS-CoV-2 of coronavirus disease 2019 (COVID-19) using PCR and real-time PCR
- (2020) Myungsun Park et al. EXPERIMENTAL AND MOLECULAR MEDICINE
- Coinfections with SARS-CoV-2 and other respiratory pathogens
- (2020) Aniruddha Hazra et al. INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY
- A recurrent mutation at position 26,340 of SARS-CoV-2 is associated with failure of the E-gene qRT-PCR utilized in a commercial dual-target diagnostic assay
- (2020) Maria Artesi et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study
- (2020) Luke W Meredith et al. LANCET INFECTIOUS DISEASES
- Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing
- (2020) Laura Riva et al. NATURE
- Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling
- (2020) Rebecca J. Rockett et al. NATURE MEDICINE
- Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands
- (2020) Bas B. Oude Munnink et al. NATURE MEDICINE
- Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT–qPCR primer–probe sets
- (2020) Chantal B. F. Vogels et al. Nature Microbiology
- Coinfection with other respiratory pathogens in COVID-19 patients
- (2020) Andrea Calcagno et al. CLINICAL MICROBIOLOGY AND INFECTION
- Targeted Rapid Testing for SARS-CoV-2 in the Emergency Department is Associated with Large Reductions in Uninfected Patient Exposure Time
- (2020) Jeremiah S. Hinson et al. JOURNAL OF HOSPITAL INFECTION
- Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide
- (2020) Sandra Isabel et al. Scientific Reports
- Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic
- (2020) Sureshnee Pillay et al. Genes
- Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer
- (2020) Victoria A. Avanzato et al. CELL
- Emergence of a new SARS-CoV-2 variant in the UK
- (2020) Julian W Tang et al. JOURNAL OF INFECTION
- Global Outbreaks and Origins of a Chikungunya Virus Variant Carrying Mutations Which May Increase Fitness for Aedes aegypti: Revelations from the 2016 Mandera, Kenya Outbreak
- (2019) Irina Maljkovic Berry et al. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
- Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo
- (2019) Tony Li et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Is a Universal Influenza Virus Vaccine Possible?
- (2019) Raffael Nachbagauer et al. Annual Review of Medicine
- Evaluating the use of whole genome sequencing for the investigation of a large mumps outbreak in Ontario, Canada
- (2019) P. J. Stapleton et al. Scientific Reports
- Genomic and epidemiological monitoring of yellow fever virus transmission potential
- (2018) N. R. Faria et al. SCIENCE
- The discovery of Bombali virus adds further support for bats as hosts of ebolaviruses
- (2018) Tracey Goldstein et al. Nature Microbiology
- Use of Sequence-Independent, Single-Primer-Amplification (SISPA) for rapid detection, identification, and characterization of avian RNA viruses
- (2017) Klaudia Chrzastek et al. VIROLOGY
- Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread
- (2016) Irina Maljkovic Berry et al. BMC BIOLOGY
- Mechanisms of viral mutation
- (2016) Rafael Sanjuán et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- 1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America
- (2016) Michael Worobey et al. NATURE
- Zika virus in the Americas: Early epidemiological and genetic findings
- (2016) N. R. Faria et al. SCIENCE
- Genomic variation in macrophage-cultured European porcine reproductive and respiratory syndrome virus Olot/91 revealed using ultra-deep next generation sequencing
- (2014) Zen H Lu et al. Virology Journal
- Early clinical response and presence of viral resistant minority variants: a proof of concept study
- (2014) Annapaola Callegaro et al. Journal of the International AIDS Society
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK
- (2013) J. McDONNELL et al. EPIDEMIOLOGY AND INFECTION
- A molecular marker of artemisinin-resistant Plasmodium falciparum malaria
- (2013) Frédéric Ariey et al. NATURE
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
- (2012) Andreas Wilm et al. NUCLEIC ACIDS RESEARCH
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