Evaluating the use of whole genome sequencing for the investigation of a large mumps outbreak in Ontario, Canada

Management and control of communicable diseases in schools and other child care settings: systematic review on the incubation period and period of infectiousness

(2018) Ida Czumbel et al.   BMC INFECTIOUS DISEASES

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico

(2018) Julien Thézé et al.   Cell Host & Microbe

Genomic non-coding regions reveal hidden patterns of mumps virus circulation in Spain, 2005 to 2015

(2018) Ana M Gavilán et al.   Eurosurveillance

Laboratory testing and phylogenetic analysis during a mumps outbreak in Ontario, Canada

(2018) Arnaud G. L’Huillier et al.   Virology Journal

An outbreak of mumps with genetic strain variation in a highly vaccinated student population in Scotland

(2017) L. J. WILLOCKS et al.   EPIDEMIOLOGY AND INFECTION

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

(2017) Joshua Quick et al.   Nature Protocols

Taming the BEAST—A Community Teaching Material Resource for BEAST 2

(2017) Joëlle Barido-Sottani et al.   SYSTEMATIC BIOLOGY

Notes from the Field: Complications of Mumps During a University Outbreak Among Students Who Had Received 2 Doses of Measles-Mumps-Rubella Vaccine — Iowa, July 2015–May 2016

(2017) Matthew Donahue et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Challenges in Interpretation of Diagnostic Test Results in a Mumps Outbreak in a Highly Vaccinated Population

(2016) L. A. Trotz-Williams et al.   Clinical and Vaccine Immunology

Mumps Outbreak Among a Highly Vaccinated University Community—New York City, January–April 2014

(2016) Leena N. Patel et al.   CLINICAL INFECTIOUS DISEASES

Whole-Genome Sequencing of Measles Virus Genotypes H1 and D8 During Outbreaks of Infection Following the 2010 Olympic Winter Games Reveals Viral Transmission Routes

(2015) Jennifer L. Gardy et al.   JOURNAL OF INFECTIOUS DISEASES

Reemergence and Amplification of Tuberculosis in the Canadian Arctic

(2015) Robyn S. Lee et al.   JOURNAL OF INFECTIOUS DISEASES

Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis

(2015) Thomas Briese et al.   mBio

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates

(2014) S. Duchene et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic diversity of mumps virus and global distribution of the 12 genotypes

(2014) Li Jin et al.   REVIEWS IN MEDICAL VIROLOGY

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

GenGIS 2: Geospatial Analysis of Traditional and Genetic Biodiversity, with New Gradient Algorithms and an Extensible Plugin Framework

(2013) Donovan H. Parks et al.   PLoS One

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

An assessment of mumps vaccine effectiveness by dose during an outbreak in Canada

(2011) S. L. Deeks et al.   CANADIAN MEDICAL ASSOCIATION JOURNAL

Molecular Epidemiological Evaluation of the Recent Resurgence in Mumps Virus Infections in Ireland

(2010) M. J. Carr et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Mumps

(2008) Anders Hviid et al.   LANCET

Recent Resurgence of Mumps in the United States

(2008) Gustavo H. Dayan et al.   NEW ENGLAND JOURNAL OF MEDICINE