Evidence of multiple genome duplication events in Mytilus evolution

Complex-dependent histone acetyltransferase activity of KAT8 determines its role in transcription and cellular homeostasis

(2021) Aliaksandra Radzisheuskaya et al.   MOLECULAR CELL

Extensive genome-wide duplications in the eastern oyster ( Crassostrea virginica )

(2021) Tejashree H. Modak et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molluscan phylogenomics requires strategically selected genomes

(2021) Julia D. Sigwart et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Pearls of wisdom—a Theo Murphy issue on molluscan genomics

(2021) Angus Davison et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic improvement technologies to support the sustainable growth of UK aquaculture

(2021) Tim Regan et al.   Reviews in Aquaculture

Chromosome-level genome assembly of the hard-shelled mussel Mytilus coruscus, a widely distributed species from the temperate areas of East Asia

(2021) Jin-Long Yang et al.   GigaScience

Marine stepping‐stones: Connectivity of Mytilus edulis populations between offshore energy installations

(2020) Joop W. P. Coolen et al.   MOLECULAR ECOLOGY

Unorthodox features in two venerid bivalves with doubly uniparental inheritance of mitochondria

(2020) Charlotte Capt et al.   Scientific Reports

Transcriptome analysis reveals differential immune related genes expression in Ruditapes philippinarum under hypoxia stress: potential HIF and NF-κB crosstalk in immune responses in clam

(2020) Hongtao Nie et al.   BMC GENOMICS

Genome‐wide insights into introgression and its consequences for genome‐wide heterozygosity in the Mytilus species complex across Europe

(2020) David L. J. Vendrami et al.   Evolutionary Applications

RepeatModeler2 for automated genomic discovery of transposable element families

(2020) Jullien M. Flynn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Whole-Genome Sequencing and Hybrid Assembly of Mytilus coruscus

(2020) Ronghua Li et al.   Frontiers in Genetics

Emerging Roles of the TRIM E3 Ubiquitin Ligases MID1 and MID2 in Cytokinesis

(2019) Melania Eva Zanchetta et al.   Frontiers in Physiology

The hidden side of a major marine biogeographic boundary: a wide mosaic hybrid zone at the Atlantic–Mediterranean divide reveals the complex interaction between natural and genetic barriers in mussels

(2019) Tahani El Ayari et al.   HEREDITY

Rapamycin directly activates lysosomal mucolipin TRP channels independent of mTOR

(2019) Xiaoli Zhang et al.   PLOS BIOLOGY

AMPAR Palmitoylation Tunes Synaptic Strength: Implications for Synaptic Plasticity and Disease

(2019) Kevin P. Koster   JOURNAL OF NEUROSCIENCE

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

A mitochondrial genome phylogeny of Mytilidae (Bivalvia: Mytilida)

(2019) Yucheol Lee et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Kelch-like proteins: Physiological functions and relationships with diseases

(2019) Xiaoxian Shi et al.   PHARMACOLOGICAL RESEARCH

Characterization and Immobilization of a Novel SGNH Family Esterase (LaSGNH1) from Lactobacillus acidophilus NCFM

(2019) Ly Thi Huong Luu Le et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative genomics reveals divergent thermal selection in warm‐ and cold‐tolerant marine mussels

(2019) Iva Popovic et al.   MOLECULAR ECOLOGY

Fast and accurate long-read assembly with wtdbg2

(2019) Jue Ruan et al.   NATURE METHODS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

New diagnostic SNP molecular markers for the Mytilus species complex

(2018) Joanna Wilson et al.   PLoS One

Multiple large-scale gene and genome duplications during the evolution of hexapods

(2018) Zheng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing

(2018) Edwin A. Solares et al.   G3-Genes Genomes Genetics

Genomic abnormalities affecting mussels (Mytilus edulis-galloprovincialis) in France are related to ongoing neoplastic processes, evidenced by dual flow cytometry and cell monolayer analyses

(2018) Abdellah Benadelmouna et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

(2018) Michael J. Roach et al.   BMC BIOINFORMATICS

New approach for understanding genome variations in KEGG

(2018) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

Sequence-Based Analysis of Thermal Adaptation and Protein Energy Landscapes in an Invasive Blue Mussel (Mytilus galloprovincialis)

(2017) Norah P. Saarman et al.   Genome Biology and Evolution

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Limited locomotive ability relaxed selective constraints on molluscs mitochondrial genomes

(2017) Shao’e Sun et al.   Scientific Reports

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

MeDuSa: a multi-draft based scaffolder

(2015) Emanuele Bosi et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

OsHV-1 countermeasures to the Pacific oyster's anti-viral response

(2015) Timothy J. Green et al.   FISH & SHELLFISH IMMUNOLOGY

An updated molecular basis for mussel immunity

(2015) Marco Gerdol et al.   FISH & SHELLFISH IMMUNOLOGY

Intraspecific Polymorphism, Interspecific Divergence, and the Origins of Function-Altering Mutations in Deer Mouse Hemoglobin

(2015) Chandrasekhar Natarajan et al.   MOLECULAR BIOLOGY AND EVOLUTION

mixtools: AnRPackage for Analyzing Finite Mixture Models

(2015) Tatiana Benaglia et al.   Journal of Statistical Software

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

jvenn: an interactive Venn diagram viewer

(2014) Philippe Bardou et al.   BMC BIOINFORMATICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallopChlamys farreri

(2013) X. Fu et al.   Molecular Ecology Resources

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Molecular and functional characterization of HdHSP20: A biomarker of environmental stresses in disk abalone Haliotis discus discus

(2012) Qiang Wan et al.   FISH & SHELLFISH IMMUNOLOGY

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

(2011) Vincent Ranwez et al.   PLoS One

Food Supply and Seawater pCO2 Impact Calcification and Internal Shell Dissolution in the Blue Mussel Mytilus edulis

(2011) Frank Melzner et al.   PLoS One

Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales

(2010) Tao Shi et al.   ANNALS OF BOTANY

Whole-Genome Positive Selection and Habitat-Driven Evolution in a Shallow and a Deep-Sea Urchin

(2010) Thomas A. Oliver et al.   Genome Biology and Evolution

Sulfurtransferases 1 and 2 Play Essential Roles in Embryo and Seed Development inArabidopsis thaliana

(2010) Guohong Mao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization and influences of classical insect hormones on the expression profiles of a molting carboxypeptidase A from the cotton bollworm (Helicoverpa armigera)

(2009) Y-P. Sui et al.   INSECT MOLECULAR BIOLOGY

On the Origin and Spread of an Adaptive Allele in Deer Mice

(2009) C. R. Linnen et al.   SCIENCE

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records

(2008) K. J Peterson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES