Modeling multi-scale data via a network of networks

Structure-based protein function prediction using graph convolutional networks

(2021) Vladimir Gligorijević et al.   Nature Communications

SDN2GO: An Integrated Deep Learning Model for Protein Function Prediction

(2020) Yideng Cai et al.   Frontiers in Bioengineering and Biotechnology

Network-based protein structural classification

(2020) Khalique Newaz et al.   Royal Society Open Science

Rethinking brain-wide interactions through multi-region ‘network of networks’ models

(2020) Matthew G Perich et al.   CURRENT OPINION IN NEUROBIOLOGY

DeepFunc: A Deep Learning Framework for Accurate Prediction of Protein Functions from Protein Sequences and Interactions

(2019) Fuhao Zhang et al.   PROTEOMICS

A network-of-networks percolation analysis of cascading failures in spatially co-located road-sewer infrastructure networks

(2019) Shangjia Dong et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Similar neural responses predict friendship

(2018) Carolyn Parkinson et al.   Nature Communications

Evidential identification of influential nodes in network of networks

(2018) Meizhu Li et al.   CHAOS SOLITONS & FRACTALS

Model of brain activation predicts the neural collective influence map of the brain

(2017) Flaviano Morone et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Brain and Social Networks: Fundamental Building Blocks of Human Experience

(2017) Emily B. Falk et al.   TRENDS IN COGNITIVE SCIENCES

A Network Neuroscience of Human Learning: Potential to Inform Quantitative Theories of Brain and Behavior

(2017) Danielle S. Bassett et al.   TRENDS IN COGNITIVE SCIENCES

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison

(2017) Fazle E. Faisal et al.   Scientific Reports

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model

(2016) Jingchao Ni et al.   BMC BIOINFORMATICS

Representing higher-order dependencies in networks

(2016) J. Xu et al.   Science Advances

Improving protein function prediction using domain and protein complexes in PPI networks

(2014) Wei Peng et al.   BMC Systems Biology

Revealing the Hidden Language of Complex Networks

(2014) Ömer Nebil Yaveroğlu et al.   Scientific Reports

The Seventh Asia Pacific Bioinformatics Conference (APBC2009)

(2009) Michael Q Zhang et al.   BMC BIOINFORMATICS

Hierarchical structure and the prediction of missing links in networks

(2008) Aaron Clauset et al.   NATURE