Ecological succession leads to chemosynthesis in mats colonizing wood in sea water

Temporal and spatial constraints on community assembly during microbial colonization of wood in seawater

(2015) Dimitri Kalenitchenko et al.   ISME Journal

Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics

(2015) Tomàs Llorens-Marès et al.   ISME Journal

Xylotrophic bivalves: aspects of their biology and the impacts of humans

(2015) Janet R. Voight   JOURNAL OF MOLLUSCAN STUDIES

Microbial Communities in Sunken Wood Are Structured by Wood-Boring Bivalves and Location in a Submarine Canyon

(2014) Sonja K. Fagervold et al.   PLoS One

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of wood fall colonization in relation to sulfide concentration in a mangrove swamp

(2013) Mélina C.Z. Laurent et al.   MARINE ENVIRONMENTAL RESEARCH

The First Genomic and Proteomic Characterization of a Deep-Sea Sulfate Reducer: Insights into the Piezophilic Lifestyle of Desulfovibrio piezophilus

(2013) Nathalie Pradel et al.   PLoS One

How Deep-Sea Wood Falls Sustain Chemosynthetic Life

(2013) Christina Bienhold et al.   PLoS One

Microbial communities associated with the degradation of oak wood in the Blanes submarine canyon and its adjacent open slope (NW Mediterranean)

(2013) S.K. Fagervold et al.   PROGRESS IN OCEANOGRAPHY

Sulfide production and consumption in degrading wood in the marine environment

(2012) Mustafa Yücel et al.   CHEMOSPHERE

The Fate of Terrestrial Organic Carbon in the Marine Environment

(2011) Neal E. Blair et al.   Annual Review of Marine Science

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Niche differentiation among mat-forming, sulfide-oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea)

(2011) S. GRÜNKE et al.   Geobiology

Characterization of the Active Bacterial Community Involved in Natural Attenuation Processes in Arsenic-Rich Creek Sediments

(2011) Odile Bruneel et al.   MICROBIAL ECOLOGY

Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean

(2010) Michael Hügler et al.   Annual Review of Marine Science

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

A novel, mat-forming Thiomargarita population associated with a sulfidic fluid flow from a deep-sea mud volcano

(2010) Anne-Christin Girnth et al.   ENVIRONMENTAL MICROBIOLOGY

Desulfovibrio piezophilus sp. nov., a piezophilic, sulfate-reducing bacterium isolated from wood falls in the Mediterranean Sea

(2010) S. Khelaifia et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

An integrative study of a meromictic lake ecosystem in Antarctica

(2010) Federico M Lauro et al.   ISME Journal

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

(2010) Amrita Pati et al.   Standards in Genomic Sciences

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Sulphur-oxidizing extracellular bacteria in the gills of Mytilidae associated with wood falls

(2008) Sébastien Duperron et al.   FEMS MICROBIOLOGY ECOLOGY

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY