Label-Free Profiling of up to 200 Single-Cell Proteomes per Day Using a Dual-Column Nanoflow Liquid Chromatography Platform

High-Throughput, Comprehensive Single-Cell Proteomic Analysis of Xenopus laevis Embryos at the 50-Cell Stage Using a Microplate-Based MICROFASP System

(2022) Zhenbin Zhang et al.   ANALYTICAL CHEMISTRY

Streamlined single-cell proteomics by an integrated microfluidic chip and data-independent acquisition mass spectrometry

(2022) Sofani Tafesse Gebreyesus et al.   Nature Communications

Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation

(2022) Andreas‐David Brunner et al.   Molecular Systems Biology

Three-dimensional feature matching improves coverage for single-cell proteomics based on ion mobility filtering

(2022) Jongmin Woo et al.   Cell Systems

The emerging landscape of single-molecule protein sequencing technologies

(2021) Javier Antonio Alfaro et al.   NATURE METHODS

Improved Single-Cell Proteome Coverage Using Narrow-Bore Packed NanoLC Columns and Ultrasensitive Mass Spectrometry

(2020) Yongzheng Cong et al.   ANALYTICAL CHEMISTRY

Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts

(2020) Catherine G. Vasilopoulou et al.   Nature Communications

Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography–Mass Spectrometry for High-Throughput Single-Cell Proteomics

(2020) Sarah M. Williams et al.   ANALYTICAL CHEMISTRY

Improved Sensitivity of Ultralow Flow LC–MS-Based Proteomic Profiling of Limited Samples Using Monolithic Capillary Columns and FAIMS Technology

(2020) Michal Greguš et al.   ANALYTICAL CHEMISTRY

Single-Cell Proteomics: Progress and Prospects

(2020) Ryan T. Kelly   MOLECULAR & CELLULAR PROTEOMICS

Lowering Sample Requirements to Study Tyrosine Kinase Signaling Using Phosphoproteomics with the TMT Calibrator Approach

(2020) Bin Fang et al.   PROTEOMICS

Defining the carrier proteome limit for single-cell proteomics

(2020) Tommy K. Cheung et al.   NATURE METHODS

Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos

(2019) Camille Lombard-Banek et al.   ANALYTICAL CHEMISTRY

Single Cell Proteomics by Data-Independent Acquisition To Study Embryonic Asymmetry in Xenopus laevis

(2019) Anumita Saha-Shah et al.   ANALYTICAL CHEMISTRY

Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells

(2018) Ying Zhu et al.   Nature Communications

apQuant: Accurate Label-Free Quantification by Quality Filtering

(2018) Johannes Doblmann et al.   JOURNAL OF PROTEOME RESEARCH

Single Cell Proteomics Using Frog (Xenopus laevis) Blastomeres Isolated from Early Stage Embryos, Which Form a Geometric Progression in Protein Content

(2016) Liangliang Sun et al.   ANALYTICAL CHEMISTRY

Single-Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16-Cell Frog (Xenopus ) Embryo

(2016) Camille Lombard-Banek et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

Combined tissue and fluid proteomics with Tandem Mass Tags to identify low-abundance protein biomarkers of disease in peripheral body fluid: An Alzheimer's Disease case study

(2016) Claire L. Russell et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

A simple dual online ultra-high pressure liquid chromatography system (sDO-UHPLC) for high throughput proteome analysis

(2015) Hangyeore Lee et al.   ANALYST

A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day

(2015) Fabian Hosp et al.   MOLECULAR & CELLULAR PROTEOMICS

A fully automated dual-online multifunctional ultrahigh pressure liquid chromatography system for high-throughput proteomics analysis

(2014) Hangyeore Lee et al.   JOURNAL OF CHROMATOGRAPHY A

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Dual LC–MS Platform for High-Throughput Proteome Analysis

(2013) Dennis J. Orton et al.   JOURNAL OF PROTEOME RESEARCH

Picoelectrospray Ionization Mass Spectrometry Using Narrow-Bore Chemically Etched Emitters

(2013) Ioan Marginean et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Single-Cell Analysis in Biotechnology, Systems Biology, and Biocatalysis

(2012) Frederik S.O. Fritzsch et al.   Annual Review of Chemical and Biomolecular Engineering

Chemical and biological single cell analysis

(2010) Andreas Schmid et al.   CURRENT OPINION IN BIOTECHNOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Increased Throughput and Reduced Carryover of Mass Spectrometry-Based Proteomics Using a High-Efficiency Nonsplit Nanoflow Parallel Dual-Column Capillary HPLC System

(2008) Hong Wang et al.   JOURNAL OF PROTEOME RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Fully Automated Four-Column Capillary LC−MS System for Maximizing Throughput in Proteomic Analyses

(2007) Eric A. Livesay et al.   ANALYTICAL CHEMISTRY