The Structure of the Seasonal Benthic Diatom Community and Its Relationship With Environmental Factors in the Yellow River Delta

DNA metabarcoding and morphological methods show complementary patterns in the metacommunity organization of lentic epiphytic diatoms

(2021) Alejandro Nistal-García et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Unraveling bacterial community structure and function and their links with natural salinity gradient in the Yellow River Delta

(2021) Zifang Chi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

High-throughput sequencing analysis reveals dynamic seasonal succession of diatom assemblages in a temperate tidal flat

(2020) Sung Min An et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Intensive land uses modify assembly process and potential metabolic function of edaphic bacterial communities in the Yellow River Delta, China

(2020) Yuxan Zou et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Monitoring the ecological status of rivers with diatom eDNA metabarcoding: a comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index

(2020) Laure Apothéloz‐Perret‐Gentil et al.   MOLECULAR ECOLOGY

Environmental drivers affecting the bacterial community of intertidal sediments in the Yellow Sea

(2020) Hanbyul Lee et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil bacterial community response to long-term land use conversion in Yellow River Delta

(2020) Huan He et al.   APPLIED SOIL ECOLOGY

Nitrate respiration and diel migration patterns of diatoms are linked in sediments underneath a microbial mat

(2020) Elisa Merz et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental DNA metabarcoding reveals estuarine benthic community response to nutrient enrichment – Evidence from an in-situ experiment

(2020) D.E. Clark et al.   ENVIRONMENTAL POLLUTION

Disentangling effects of river inflow and marine diffusion in shaping the planktonic communities in a heavily polluted estuary

(2020) Yi Sun et al.   ENVIRONMENTAL POLLUTION

PAEs and PBDEs in plastic fragments and wetland sediments in Yangtze estuary

(2020) Hua Deng et al.   JOURNAL OF HAZARDOUS MATERIALS

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

(2019) Hannah Weigand et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Nitrogen as the main driver of benthic diatom composition and diversity in oligotrophic coastal systems

(2019) Savvas Kafouris et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Molecular biogeography of planktonic and benthic diatoms in the Yangtze River

(2019) Jiawen Wang et al.   Microbiome

Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary

(2018) Mingcong Li et al.   Scientific Reports

Diatom Silica for Biomedical Applications: Recent Progress and Advances

(2018) Shaheer Maher et al.   Advanced Healthcare Materials

Four decades' dynamics of coastal blue carbon storage driven by land use/land cover transformation under natural and anthropogenic processes in the Yellow River Delta, China

(2018) Tiantian Ma et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Nutrients, heavy metals and microbial communities co-driven distribution of antibiotic resistance genes in adjacent environment of mariculture

(2017) Zelong Zhao et al.   ENVIRONMENTAL POLLUTION

Development of an integrated indicator system to assess the impacts of reclamation engineering on a river estuary

(2017) Yan Xu et al.   MARINE POLLUTION BULLETIN

Inorganic carbon availability in benthic diatom communities: photosynthesis and migration

(2017) Jorge Marques da Silva et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Macroclimatic change expected to transform coastal wetland ecosystems this century

(2017) Christopher A. Gabler et al.   Nature Climate Change

Design and Evaluation of Illumina MiSeq-Compatible, 18S rRNA Gene-Specific Primers for Improved Characterization of Mixed Phototrophic Communities

(2016) Ian M. Bradley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relationships between diatoms and tidal environments in Oregon and Washington, USA

(2016) Yuki Sawai et al.   DIATOM RESEARCH

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Effect of activities associated with coastal reclamation on the macrobenthos community in coastal wetlands of the Yellow River Delta, China: A literature review and systematic assessment

(2016) Wei Yang et al.   OCEAN & COASTAL MANAGEMENT

Insights into global diatom distribution and diversity in the world’s ocean

(2016) Shruti Malviya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

(2015) Joana Amorim Visco et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Beyond just sea-level rise: considering macroclimatic drivers within coastal wetland vulnerability assessments to climate change

(2015) Michael J. Osland et al.   GLOBAL CHANGE BIOLOGY

Seasonal Variation and Sources of Dissolved Nutrients in the Yellow River, China

(2015) Yao Gong et al.   International Journal of Environmental Research and Public Health

Freshwater availability and coastal wetland foundation species: ecological transitions along a rainfall gradient

(2014) Michael J. Osland et al.   ECOLOGY

Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies

(2014) Jonas Zimmermann et al.   Molecular Ecology Resources

Benthic diatom response to changing environmental conditions

(2012) Tamara Cibic et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Scale considerations in using diatoms as indicators of sea-level change: lessons from Alaska

(2012) Emma P. Watcham et al.   JOURNAL OF QUATERNARY SCIENCE

Life-forms, cell-sizes and ecological guilds of diatoms in European rivers

(2012) F. Rimet et al.   Knowledge and Management of Aquatic Ecosystems

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Using diatom life-forms and ecological guilds to assess organic pollution and trophic level in rivers: a case study of rivers in south-eastern France

(2011) Vincent Berthon et al.   HYDROBIOLOGIA

Succession in Stream Biofilms is an Environmentally Driven Gradient of Stress Tolerance

(2011) Sophia I. Passy et al.   MICROBIAL ECOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

The value of estuarine and coastal ecosystem services

(2010) Edward B. Barbier et al.   ECOLOGICAL MONOGRAPHS

Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments

(2010) Emily B Hollister et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

COASTAL DIATOM-ENVIRONMENT RELATIONSHIPS IN THE BRACKISH BALTIC SEA

(2009) Anna Ulanova et al.   JOURNAL OF PHYCOLOGY

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Barcoding of Diatoms: Nuclear Encoded ITS Revisited

(2009) Mónica B.J. Moniz et al.   PROTIST

Contemporary distributions of saltmarsh diatoms in the Seymour–Belize Inlet Complex, British Columbia, Canada: Implications for studies of sea-level change

(2008) Helen M. Roe et al.   MARINE MICROPALEONTOLOGY