Annotation of Potential Vaccine Targets and Design of a Multi-Epitope Subunit Vaccine against Yersinia pestis through Reverse Vaccinology and Validation through an Agent-Based Modeling Approach

Immunogenomics guided design of immunomodulatory multi-epitope subunit vaccine against the SARS-CoV-2 new variants, and its validation through in silico cloning and immune simulation

(2021) Abbas Khan et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Combined drug repurposing and virtual screening strategies with molecular dynamics simulation identified potent inhibitors for SARS-CoV-2 main protease (3CLpro)

(2020) Abbas Khan et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Phylogenetic Analysis and Structural Perspectives of RNA-Dependent RNA-Polymerase Inhibition from SARs-CoV-2 with Natural Products

(2020) Abbas Khan et al.   Interdisciplinary Sciences-Computational Life Sciences

Structural Insights into the mechanism of RNA recognition by the N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein

(2020) Abbas Khan et al.   Computational and Structural Biotechnology Journal

T and B cell Epitope analysis of SARS‐CoV‐2 S protein based on immunoinformatics and experimental research

(2020) Ziwei Chen et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Towards the first multi-epitope recombinant vaccine against Crimean-Congo hemorrhagic fever virus: A computer-aided vaccine design approach

(2019) Mokhtar Nosrati et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Yersinia pestis Pla protein thwarts T cell defense against plague

(2019) Stephen T. Smiley et al.   INFECTION AND IMMUNITY

VaxiJen Dataset of Bacterial Immunogens: An Update

(2019) Nevena Zaharieva et al.   Current Computer-Aided Drug Design

Yersinia pestis and plague: an updated view on evolution, virulence determinants, immune subversion, vaccination, and diagnostics

(2019) Christian E. Demeure et al.   GENES AND IMMUNITY

Plague, camels, and lice

(2019) Rémi Barbieri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vaccinomics strategy for developing a unique multi-epitope monovalent vaccine against Marburg marburgvirus

(2019) Mahmudul Hasan et al.   INFECTION GENETICS AND EVOLUTION

Structural and free energy landscape of novel mutations in ribosomal protein S1 (rpsA) associated with pyrazinamide resistance

(2019) Muhammad Tahir Khan et al.   Scientific Reports

Immunoinformatics and structural vaccinology driven prediction of multi-epitope vaccine against Mayaro virus and validation through in-silico expression

(2019) Shahzeb Khan et al.   INFECTION GENETICS AND EVOLUTION

Genetic diversity and antigenicity analysis of Streptococcus pneumoniae pneumolysin isolated from children with pneumococcal infection

(2019) Chenxi Han et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Immunoinformatics approaches to explore Helicobacter Pylori proteome (Virulence Factors) to design B and T cell multi-epitope subunit vaccine

(2019) Mazhar Khan et al.   Scientific Reports

A comparative in silico linear B-cell epitope prediction and characterization for South American and African Trypanosoma vivax strains

(2018) Rafael Lucas Muniz Guedes et al.   GENOMICS

Computational identification, characterization and validation of potential antigenic peptide vaccines from hrHPVs E6 proteins using immunoinformatics and computational systems biology approaches

(2018) Abbas Khan et al.   PLoS One

TSPO PET for glioma imaging using the novel ligand 18F-GE-180: first results in patients with glioblastoma

(2017) Nathalie L. Albert et al.   EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING

Plague: Recognition, Treatment, and Prevention

(2017) Ruifu Yang   JOURNAL OF CLINICAL MICROBIOLOGY

Cytokine storms in infectious diseases

(2017) John R. Teijaro   Seminars in Immunopathology

Pneumonic Plague: The Darker Side of Yersinia pestis

(2016) Roger D. Pechous et al.   TRENDS IN MICROBIOLOGY

CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation

(2014) Chin-Sheng Yu et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

GalaxyWEB server for protein structure prediction and refinement

(2012) J. Ko et al.   NUCLEIC ACIDS RESEARCH

An overview of the Amber biomolecular simulation package

(2012) Romelia Salomon-Ferrer et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

Immune system simulation online

(2011) N. Rapin et al.   BIOINFORMATICS

Insight into Bacterial Virulence Mechanisms against Host Immune Response via the Yersinia pestis-Human Protein-Protein Interaction Network

(2011) Huiying Yang et al.   INFECTION AND IMMUNITY

Identification of a Highly Antigenic Linear B Cell Epitope within Plasmodium vivax Apical Membrane Antigen 1 (AMA-1)

(2011) Lilian Lacerda Bueno et al.   PLoS One

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

ElliPro: a new structure-based tool for the prediction of antibody epitopes

(2008) Julia Ponomarenko et al.   BMC BIOINFORMATICS

Interaction between Yersinia pestis and the Host Immune System

(2008) B. Li et al.   INFECTION AND IMMUNITY

Predicting linear B‐cell epitopes using string kernels

(2008) Yasser EL‐Manzalawy et al.   JOURNAL OF MOLECULAR RECOGNITION