The Complete Genome Sequence and Structure of the Oleaginous Rhodococcus opacus Strain PD630 Through Nanopore Technology

Genetic toolkits for engineering Rhodococcus species with versatile applications

(2021) Youxiang Liang et al.   BIOTECHNOLOGY ADVANCES

Systems biology and metabolic engineering of Rhodococcus for bioconversion and biosynthesis processes

(2021) Eva Donini et al.   FOLIA MICROBIOLOGICA

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

(2021) Mosè Manni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rhodococcus as Biofactories for Microbial Oil Production

(2021) Héctor M. Alvarez et al.   MOLECULES

Stress response in Rhodococcus strains

(2021) Miroslav Pátek et al.   BIOTECHNOLOGY ADVANCES

Using multiple reference genomes to identify and resolve annotation inconsistencies

(2020) Patrick J. Monnahan et al.   BMC GENOMICS

Biotechnology of Rhodococcus for the production of valuable compounds

(2020) Martina Cappelletti et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation

(2020) Wenjun Li et al.   NUCLEIC ACIDS RESEARCH

Engineering of an oleaginous bacterium for the production of fatty acids and fuels

(2019) Hye Mi Kim et al.   Nature Chemical Biology

Development of Rhodococcus opacus as a chassis for lignin valorization and bioproduction of high-value compounds

(2019) Winston E. Anthony et al.   Biotechnology for Biofuels

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

(2019) Pierre-Alain Chaumeil et al.   BIOINFORMATICS

KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold

(2019) Takuya Aramaki et al.   BIOINFORMATICS

Molecular Toolkit for Gene Expression Control and Genome Modification in Rhodococcus opacus PD630

(2018) Drew M. DeLorenzo et al.   ACS Synthetic Biology

Multi-omic elucidation of aromatic catabolism in adaptively evolved Rhodococcus opacus

(2018) William R. Henson et al.   METABOLIC ENGINEERING

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

The present and future ofde novowhole-genome assembly

(2016) Jang-il Sohn et al.   BRIEFINGS IN BIOINFORMATICS

Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulatingRhodococcus opacusPD630

(2016) Aki Yoneda et al.   NUCLEIC ACIDS RESEARCH

Phenotype microarray analysis may unravel genetic determinants of the stress response by Rhodococcus aetherivorans BCP1 and Rhodococcus opacus R7

(2016) Martina Cappelletti et al.   RESEARCH IN MICROBIOLOGY

Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance

(2015) Alessandro Orro et al.   PLoS One

Rapid adaptation of Rhodococcus erythropolis cells to salt stress by synthesizing polyunsaturated fatty acids

(2014) Carla C. C. R. de Carvalho et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Integrated omics study delineates the dynamics of lipid droplets in Rhodococcus opacus PD630

(2013) Y. Chen et al.   NUCLEIC ACIDS RESEARCH

Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies

(2011) Joshua Wetzel et al.   BMC BIOINFORMATICS

Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development

(2011) Jason W. Holder et al.   PLoS Genetics

Analyses of both thealkBGene Transcriptional Start Site andalkBPromoter-Inducing Properties ofRhodococcussp. Strain BCP1 Grown onn-Alkanes

(2010) M. Cappelletti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY