The Effects of Non-Fiber Carbohydrate Content and Forage Type on Rumen Microbiome of Dairy Cows

Review: Ruminal microbiome and microbial metabolome: effects of diet and ruminant host

(2020) C. J. Newbold et al.   Animal

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Effects of the dietary nonfiber carbohydrate content on lactation performance, rumen fermentation, and nitrogen utilization in mid-lactation dairy cows receiving corn stover

(2018) Zihai Wei et al.   Journal of Animal Science and Biotechnology

Monoglobus pectinilyticus gen. nov., sp. nov., a pectinolytic bacterium isolated from human faeces

(2017) Caroline C. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Effects of dietary nitrogen levels and carbohydrate sources on apparent ruminal synthesis of some B vitamins in dairy cows

(2016) V. Beaudet et al.   JOURNAL OF DAIRY SCIENCE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations

(2015) Paul J. Weimer   Frontiers in Microbiology

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Pectin Induces an In Vitro Rumen Microbial Population Shift Attributed to the Pectinolytic Treponema Group

(2014) Jing Liu et al.   CURRENT MICROBIOLOGY

Effects of alfalfa and cereal straw as a forage source on nutrient digestibility and lactation performance in lactating dairy cows

(2014) B. Wang et al.   JOURNAL OF DAIRY SCIENCE

Effects of dietary forage sources on rumen microbial protein synthesis and milk performance in early lactating dairy cows

(2013) W. Zhu et al.   JOURNAL OF DAIRY SCIENCE

Effects of cobalt supplementation and vitamin B12 injections on lactation performance and metabolism of Holstein dairy cows

(2013) M.S. Akins et al.   JOURNAL OF DAIRY SCIENCE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Effects of replacing dietary starch with neutral detergent-soluble fibre on ruminal fermentation, microbial synthesis and populations of ruminal cellulolytic bacteria using the rumen simulation technique (RUSITEC)

(2012) X. H. Zhao et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Insertion depth of oral stomach tubes may affect the fermentation parameters of ruminal fluid collected in dairy cows1

(2012) J.S. Shen et al.   JOURNAL OF DAIRY SCIENCE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Is subacute ruminal acidosis a pH related problem? Causes and tools for its control

(2011) S. Calsamiglia et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Chemical Basis of Nitrogen Recovery through the Ureide Pathway: Formation and Hydrolysis ofS-Ureidoglycine in Plants and Bacteria

(2009) Fabio Serventi et al.   ACS Chemical Biology

Influence of methionine supply on the response of lactational performance of dairy cows to supplementary folic acid and vitamin B12

(2009) A. Preynat et al.   JOURNAL OF DAIRY SCIENCE

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Effects of an intravenous endotoxin challenge on glucose and insulin dynamics in horses

(2008) Ferenc Tóth et al.   AMERICAN JOURNAL OF VETERINARY RESEARCH