Review: Ruminal microbiome and microbial metabolome: effects of diet and ruminant host

A Multi-Kingdom Study Reveals the Plasticity of the Rumen Microbiota in Response to a Shift From Non-grazing to Grazing Diets in Sheep

(2019) Alejandro Belanche et al.   Frontiers in Microbiology

Saponin-Induced Shifts in the Rumen Microbiome and Metabolome of Young Cattle

(2019) Bing Wang et al.   Frontiers in Microbiology

Rumen bacterial community responses to DPA, EPA and DHA in cattle and sheep: A comparative in vitro study

(2019) D. Carreño et al.   Scientific Reports

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

(2018) Rekha Seshadri et al.   NATURE BIOTECHNOLOGY

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

(2018) Robert D. Stewart et al.   Nature Communications

CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software

(2018) Toby J. Wilkinson et al.   Frontiers in Microbiology

Assessment of microbiome changes after rumen transfaunation: implications on improving feed efficiency in beef cattle

(2018) Mi Zhou et al.   Microbiome

A metagenomic study of the rumen virome in domestic caprids

(2018) Samuel Namonyo et al.   ARCHIVES OF VIROLOGY

Using ‘Omic Approaches to Compare Temporal Bacterial Colonization of Lolium perenne, Lotus corniculatus, and Trifolium pratense in the Rumen

(2018) Christopher L. Elliott et al.   Frontiers in Microbiology

Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future

(2018) Sharon A. Huws et al.   Frontiers in Microbiology

Rumen and plasma metabolomics profiling by UHPLC-QTOF/MS revealed metabolic alterations associated with a high-corn diet in beef steers

(2018) You Yang et al.   PLoS One

Exploring the rumen fluid metabolome using liquid chromatography-high-resolution mass spectrometry and Molecular Networking

(2018) Rafaela Takako Ribeiro de Almeida et al.   Scientific Reports

Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows

(2018) Gareth Frank Difford et al.   PLoS Genetics

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats

(2018) Leticia Abecia et al.   Frontiers in Microbiology

Dynamics of methanogenesis, ruminal fermentation and fiber digestibility in ruminants following elimination of protozoa: a meta-analysis

(2018) Zongjun Li et al.   Journal of Animal Science and Biotechnology

Livestock metabolomics and the livestock metabolome: A systematic review

(2017) Seyed Ali Goldansaz et al.   PLoS One

Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats

(2017) Leticia Abecia et al.   PLoS One

Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow’s Capacity To Harvest Energy from Its Feed

(2017) Goor Sasson et al.   mBio

Studying the Differences of Bacterial Metabolome and Microbiome in the Colon between Landrace and Meihua Piglets

(2017) Shijuan Yan et al.   Frontiers in Microbiology

Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria

(2017) Rosalind A. Gilbert et al.   Frontiers in Microbiology

Antiprotozoal Effect of Saponins in the Rumen Can Be Enhanced by Chemical Modifications in Their Structure

(2017) Eva Ramos-Morales et al.   Frontiers in Microbiology

Methane Production in Dairy Cows Correlates with Rumen Methanogenic and Bacterial Community Structure

(2017) Rebecca Danielsson et al.   Frontiers in Microbiology

PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities

(2017) Joan E. Edwards et al.   Frontiers in Microbiology

A Structural and Functional Elucidation of the Rumen Microbiome Influenced by Various Diets and Microenvironments

(2017) Simon Deusch et al.   Frontiers in Microbiology

Dietary energy drives the dynamic response of bovine rumen viral communities

(2017) Christopher L. Anderson et al.   Microbiome

Rumen Fluid Metabolomics Analysis Associated with Feed Efficiency on Crossbred Steers

(2017) Virginia M. Artegoitia et al.   Scientific Reports

Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance

(2016) Rainer Roehe et al.   PLoS Genetics

An Integrated Multi-Omics Approach Reveals the Effects of Supplementing Grass or Grass Hay with Vitamin E on the Rumen Microbiome and Its Function

(2016) Alejandro Belanche et al.   Frontiers in Microbiology

Methane Inhibition Alters the Microbial Community, Hydrogen Flow, and Fermentation Response in the Rumen of Cattle

(2016) Gonzalo Martinez-Fernandez et al.   Frontiers in Microbiology

Phylogeny of Intestinal Ciliates, Including Charonina ventriculi, and Comparison of Microscopy and 18S rRNA Gene Pyrosequencing for Rumen Ciliate Community Structure Analysis

(2015) Sandra Kittelmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impacts of feeding less food-competing feedstuffs to livestock on global food system sustainability

(2015) Christian Schader et al.   Journal of the Royal Society Interface

Programming rumen bacterial communities in newborn Merino lambs

(2015) I. De Barbieri et al.   SMALL RUMINANT RESEARCH

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

The Role of Ciliate Protozoa in the Rumen

(2015) Charles J. Newbold et al.   Frontiers in Microbiology

Manipulating rumen microbiome and fermentation through interventions during early life: a review

(2015) David R. Yáñez-Ruiz et al.   Frontiers in Microbiology

Rumen microbial communities influence metabolic phenotypes in lambs

(2015) Diego P. Morgavi et al.   Frontiers in Microbiology

Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations

(2015) Paul J. Weimer   Frontiers in Microbiology

The symbiotic intestinal ciliates and the evolution of their hosts

(2014) Seung Yeo Moon-van der Staay et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Study of methanogen communities associated with different rumen protozoal populations

(2014) Alejandro Belanche et al.   FEMS MICROBIOLOGY ECOLOGY

Archaeal abundance in post-mortem ruminal digesta may help predict methane emissions from beef cattle

(2014) R. John Wallace et al.   Scientific Reports

An Antimethanogenic Nutritional Intervention in Early Life of Ruminants Modifies Ruminal Colonization by Archaea

(2014) Leticia Abecia et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Board-invited review: Rumen microbiology: Leading the way in microbial ecology1,2

(2013) D. O. Krause et al.   JOURNAL OF ANIMAL SCIENCE

A comparison of the microbiome and the metabolome of different regions of the equine hindgut

(2012) Kirsty Dougal et al.   FEMS MICROBIOLOGY ECOLOGY

Shifts in the Rumen Microbiota Due to the Type of Carbohydrate and Level of Protein Ingested by Dairy Cattle Are Associated with Changes in Rumen Fermentation

(2012) Alejandro Belanche et al.   JOURNAL OF NUTRITION

Structures of free-living and protozoa-associated methanogen communities in the bovine rumen differ according to comparative analysis of 16S rRNA and mcrA genes

(2012) L. D. Tymensen et al.   MICROBIOLOGY-SGM

The role of microbes in rumen lipolysis and biohydrogenation and their manipulation

(2010) M. Lourenço et al.   Animal

Microbial ecosystem and methanogenesis in ruminants

(2010) D. P. Morgavi et al.   Animal

The persistence of bacterial and methanogenic archaeal communities residing in the rumen of young lambs

(2010) David R. Yáñez-Ruiz et al.   FEMS MICROBIOLOGY ECOLOGY

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY