BCEPS: A Web Server to Predict Linear B Cell Epitopes with Enhanced Immunogenicity and Cross-Reactivity

The immunodominant and neutralization linear epitopes for SARS-CoV-2

(2021) Shuai Lu et al.   Cell Reports

Linear B-Cell Epitope Prediction for In Silico Vaccine Design: A Performance Review of Methods Available via Command-Line Interface

(2021) Kosmas A. Galanis et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Prediction of unconventional protein secretion by exosomes

(2021) Alvaro Ras-Carmona et al.   BMC BIOINFORMATICS

Rapid and stable mobilization of CD8+ T cells by SARS-CoV-2 mRNA vaccine

(2021) Valerie Oberhardt et al.   NATURE

Virus-Induced CD8+ T-Cell Immunity and Its Exploitation to Contain the SARS-CoV-2 Pandemic

(2021) Maurizio Federico   Vaccines

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

(2020) Jun Lan et al.   NATURE

NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data

(2020) Birkir Reynisson et al.   NUCLEIC ACIDS RESEARCH

Structural and functional properties of SARS-CoV-2 spike protein: potential antivirus drug development for COVID-19

(2020) Yuan Huang et al.   ACTA PHARMACOLOGICA SINICA

A vaccine targeting the RBD of the S protein of SARS-CoV-2 induces protective immunity

(2020) Jingyun Yang et al.   NATURE

Potential Cross-Reactive Immunity to SARS-CoV-2 From Common Human Pathogens and Vaccines

(2020) Pedro A. Reche   Frontiers in Immunology

Dalbavancin binds ACE2 to block its interaction with SARS-CoV-2 spike protein and is effective in inhibiting SARS-CoV-2 infection in animal models

(2020) Gan Wang et al.   CELL RESEARCH

Humanized COVID‐19 decoy antibody effectively blocks viral entry and prevents SARS‐CoV‐2 infection

(2020) Kuo‐Yen Huang et al.   EMBO Molecular Medicine

Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine

(2020) Fernando P. Polack et al.   NEW ENGLAND JOURNAL OF MEDICINE

COVID-19 vaccines: The status and perspectives in delivery points of view

(2020) Jee Young Chung et al.   ADVANCED DRUG DELIVERY REVIEWS

NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning

(2019) Michael Schantz Klausen et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IEDB-AR: immune epitope database—analysis resource in 2019

(2019) Sandeep Kumar Dhanda et al.   NUCLEIC ACIDS RESEARCH

Peptide-Based Vaccines: Current Progress and Future Challenges

(2019) Ryan J. Malonis et al.   CHEMICAL REVIEWS

AbDb: antibody structure database—a database of PDB-derived antibody structures

(2018) Saba Ferdous et al.   Database-The Journal of Biological Databases and Curation

iBCE-EL: A New Ensemble Learning Framework for Improved Linear B-Cell Epitope Prediction

(2018) Balachandran Manavalan et al.   Frontiers in Immunology

The Immune Epitope Database (IEDB): 2018 update

(2018) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

(2017) Martin Closter Jespersen et al.   NUCLEIC ACIDS RESEARCH

Fundamentals and Methods for T- and B-Cell Epitope Prediction

(2017) Jose L. Sanchez-Trincado et al.   Journal of Immunology Research

An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction

(2016) Lenka Potocnakova et al.   Journal of Immunology Research

The immune epitope database (IEDB) 3.0

(2014) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

Selection of Conserved Epitopes from Hepatitis C Virus for Pan-Populational Stimulation of T-Cell Responses

(2013) Magdalena Molero-Abraham et al.   Clinical & Developmental Immunology

Improved Method for Linear B-Cell Epitope Prediction Using Antigen’s Primary Sequence

(2013) Harinder Singh et al.   PLoS One

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Prediction of MHC-Peptide Binding: A Systematic and Comprehensive Overview

(2009) Esther Lafuente et al.   CURRENT PHARMACEUTICAL DESIGN