The roles of DNA methylation and hydroxymethylation at short interspersed nuclear elements in the hypothalamic arcuate nucleus during puberty

IDR2D identifies reproducible genomic interactions

(2020) Konstantin Krismer et al.   NUCLEIC ACIDS RESEARCH

NR5A1 Gene Variants: Variable Phenotypes, New Variants, Different Outcomes

(2020) Maria F. Faienza et al.   Sexual Development

The DNA methylation landscape of advanced prostate cancer

(2020) Shuang G. Zhao et al.   NATURE GENETICS

Global translation during early development depends on the essential transcription factor PRDM10

(2020) Brenda Y. Han et al.   Nature Communications

Characterization of Genome-Wide DNA Methylation and Hydroxymethylation in Mouse Arcuate Nucleus of Hypothalamus During Puberty Process

(2020) Yihang Shen et al.   Frontiers in Genetics

Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors

(2019) Marie E Jönsson et al.   Nature Communications

Amelioration of ochratoxin-A induced cytotoxicity by prophylactic treatment of N-Acetyl-L-Tryptophan in human embryonic kidney cells

(2019) Prerna Agarwal et al.   TOXICOLOGY

Decoding the dynamic DNA methylation and hydroxymethylation landscapes in endodermal lineage intermediates during pancreatic differentiation of hESC

(2018) Jia Li et al.   NUCLEIC ACIDS RESEARCH

Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate

(2018) Jose Luis Sardina et al.   Cell Stem Cell

How is GnRH regulated in GnRH-producing neurons? Studies using GT1-7 cells as a GnRH-producing cell model

(2017) Haruhiko Kanasaki et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

The Methylcytosine Dioxygenase Ten-Eleven Translocase-2 (tet2) Enables ElevatedGnRHGene Expression and Maintenance of Male Reproductive Function

(2016) Joseph R. Kurian et al.   ENDOCRINOLOGY

The landscape of accessible chromatin in mammalian preimplantation embryos

(2016) Jingyi Wu et al.   NATURE

Pubertal development and regulation

(2016) Ana Paula Abreu et al.   Lancet Diabetes & Endocrinology

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

Relative Importance of the Arcuate and Anteroventral Periventricular Kisspeptin Neurons in Control of Puberty and Reproductive Function in Female Rats

(2015) M. H. Hu et al.   ENDOCRINOLOGY

Identification of Hypothalamic Arcuate Nucleus-Specific Enhancer Region ofKiss1Gene in Mice

(2015) Teppei Goto et al.   MOLECULAR ENDOCRINOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Ballgown bridges the gap between transcriptome assembly and expression analysis

(2015) Alyssa C Frazee et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

SINE transcription by RNA polymerase III is suppressed by histone methylation but not by DNA methylation

(2015) Dhaval Varshney et al.   Nature Communications

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcription Factor CREB3L1 Regulates Vasopressin Gene Expression in the Rat Hypothalamus

(2014) M. Greenwood et al.   JOURNAL OF NEUROSCIENCE

Serotonin Acts Through 5-HT1 and 5-HT2 Receptors to Exert Biphasic Actions on GnRH Neuron Excitability in the Mouse

(2013) Janardhan P. Bhattarai et al.   ENDOCRINOLOGY

Isolation and characterization of Ff1 and Gsdf family genes in European sea bass and identification of early gonadal markers of precocious puberty in males

(2013) Berta Crespo et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

TET enzymes, TDG and the dynamics of DNA demethylation

(2013) Rahul M. Kohli et al.   NATURE

SINE Retrotransposons Cause Epigenetic Reprogramming of Adjacent Gene Promoters

(2012) M. R. H. Estecio et al.   MOLECULAR CANCER RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Epigenetic regulation of Kiss1 gene expression mediating estrogen-positive feedback action in the mouse brain

(2012) J. Tomikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets

(2012) Zhen Shao et al.   GENOME BIOLOGY

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Expression patterns of PRDM10 during mouse embryonic development

(2011) Jin-Ah Park et al.   BMB Reports

Microtubule-associated Protein 1B (MAP1B) Is Required for Dendritic Spine Development and Synaptic Maturation

(2011) Elena Tortosa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MAP1B Regulates Axonal Development by Modulating Rho-GTPase Rac1 Activity

(2010) Carolina Montenegro-Venegas et al.   MOLECULAR BIOLOGY OF THE CELL

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Kisspeptin Depolarizes Gonadotropin-Releasing Hormone Neurons through Activation of TRPC-Like Cationic Channels

(2008) C. Zhang et al.   JOURNAL OF NEUROSCIENCE

Genome-scale DNA methylation maps of pluripotent and differentiated cells

(2008) Alexander Meissner et al.   NATURE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY