Genomewide Association Analyses of Lactation Persistency and Milk Production Traits in Holstein Cattle Based on Imputed Whole-Genome Sequence Data

Estimated genetic parameters for all genetically evaluated traits in Canadian Holsteins

(2021) G.A. Oliveira Junior et al.   JOURNAL OF DAIRY SCIENCE

Review: Genetic selection of high-yielding dairy cattle toward sustainable farming systems in a rapidly changing world

(2021) L.F. Brito et al.   Animal

Genome-wide association study and functional analyses for clinical and subclinical ketosis in Holstein cattle

(2021) R.A.N. Soares et al.   JOURNAL OF DAIRY SCIENCE

Genomic loci and genetic parameters for uterine diseases in first-parity Holstein cows and associations with milk production and fertility

(2021) Katharina May et al.   JOURNAL OF DAIRY SCIENCE

Genome wide association analysis on semen volume and milk yield using different strategies of imputation to whole genome sequence in French dairy goats

(2020) Estelle Talouarn et al.   BMC GENETICS

Associations of IL1RAP and IL1RL1 gene polymorphisms with obesity and inflammation mediators

(2020) Gyeong Im Yu et al.   INFLAMMATION RESEARCH

Genome-wide association study of milk components in Chinese Holstein cows using single nucleotide polymorphism

(2020) Tianzhen Wang et al.   Livestock Science

Genome-wide detection of signatures of selection in three Valdostana cattle populations

(2020) Salvatore Mastrangelo et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Effect of genomic selection on rate of inbreeding and coancestry and effective population size of Holstein and Jersey cattle populations

(2020) Bayode O. Makanjuola et al.   JOURNAL OF DAIRY SCIENCE

Weighted single-step genome-wide association analyses for milk traits in Holstein and Holstein x Jersey crossbred dairy cattle.

(2020) M.A. Raschia et al.   Livestock Science

GALLO: An R package for genomic annotation and integration of multiple data sources in livestock for positional candidate loci

(2020) Pablo A S Fonseca et al.   GigaScience

Genome-Wide Association Studies for the Concentration of Albumin in Colostrum and Serum in Chinese Holstein

(2020) Shan Lin et al.   Animals

Short communication: Replication of genome-wide association studies for milk production traits in Chinese Holstein by an efficient rotated linear mixed model

(2019) Dan Wang et al.   JOURNAL OF DAIRY SCIENCE

Genomic Selection and Use of Molecular Tools in Breeding Programs for Indigenous and Crossbred Cattle in Developing Countries: Current Status and Future Prospects

(2019) Raphael Mrode et al.   Frontiers in Genetics

Genome-Wide Association Study for Milk Protein Composition Traits in a Chinese Holstein Population Using a Single-Step Approach

(2019) Chenghao Zhou et al.   Frontiers in Genetics

Systematic analyses for candidate genes of milk production traits in water buffalo ( Bubalus Bubalis )

(2019) C. Du et al.   ANIMAL GENETICS

Genome‐wide association analysis and gene set enrichment analysis with SNP data identify genes associated with 305‐day milk yield in Holstein dairy cows

(2019) E. Clancey et al.   ANIMAL GENETICS

A Large-Scale Genome-Wide Association Study in U.S. Holstein Cattle

(2019) Jicai Jiang et al.   Frontiers in Genetics

Review: extended lactation in dairy cattle

(2019) J. Sehested et al.   Animal

Association analysis of polymorphism in the NR6A1 gene with the lumbar vertebrae number traits in sheep

(2019) Xiangyu Zhang et al.   Genes & Genomics

Genome-wide association for milk production traits and somatic cell score in different lactation stages of Ayrshire, Holstein, and Jersey dairy cattle

(2019) H.R. Oliveira et al.   JOURNAL OF DAIRY SCIENCE

Single Nucleotide Polymorphisms of NUCB2 and Their Genetic Associations with Milk Production Traits in Dairy Cows

(2019) Bo Han et al.   Genes

Multi-trait meta-analyses reveal 25 quantitative trait loci for economically important traits in Brown Swiss cattle

(2019) Zih-Hua Fang et al.   BMC GENOMICS

Deciphering GRINA/Lifeguard1: Nuclear Location, Ca2+ Homeostasis and Vesicle Transport

(2019) Jiménez-González et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide association study of milk and reproductive traits in dual-purpose Xinjiang Brown cattle

(2019) Jinghang Zhou et al.   BMC GENOMICS

Genome‐wide association for milk production and lactation curve parameters in Holstein dairy cows

(2019) Hadi Atashi et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

A targeted genotyping approach to enhance the identification of variants for lactation persistency in dairy cows

(2019) Duy Ngoc Do et al.   JOURNAL OF ANIMAL SCIENCE

Single-step genome-wide association for longitudinal traits of Canadian Ayrshire, Holstein, and Jersey dairy cattle

(2019) H.R. Oliveira et al.   JOURNAL OF DAIRY SCIENCE

Genetic and genomic analyses underpin the feasibility of concomitant genetic improvement of milk yield and mastitis resistance in dairy sheep

(2019) Georgios Banos et al.   PLoS One

Exosomes from dairy cows of divergent fertility; Action on endometrial cells

(2019) Yong Qin Koh et al.   JOURNAL OF REPRODUCTIVE IMMUNOLOGY

A Novel SNPs in Alpha-Lactalbumin Gene Effects on Lactation Traits in Chinese Holstein Dairy Cows

(2019) Fan Yang et al.   Animals

Efficient analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr

(2018) Florian Privé et al.   BIOINFORMATICS

Genetic parameters of milk cholesterol content in Holstein cattle

(2018) Duy N. Do et al.   CANADIAN JOURNAL OF ANIMAL SCIENCE

Use of meta-analyses and joint analyses to select variants in whole genome sequences for genomic evaluation: An application in milk production of French dairy cattle breeds

(2018) M. Teissier et al.   JOURNAL OF DAIRY SCIENCE

Short communication: Genetic association of variations in the osteopontin gene ( SPP1 ) with lactation persistency in dairy cattle

(2018) Nathalie Bissonnette   JOURNAL OF DAIRY SCIENCE

Genome-wide association studies to identify quantitative trait loci affecting milk production traits in water buffalo

(2018) J.J. Liu et al.   JOURNAL OF DAIRY SCIENCE

Genetic and nongenetic profiling of milk pregnancy-associated glycoproteins in Holstein cattle

(2018) D.J.A. Santos et al.   JOURNAL OF DAIRY SCIENCE

Genome-wide association study of milk fatty acid composition in Italian Simmental and Italian Holstein cows using single nucleotide polymorphism arrays

(2018) V. Palombo et al.   JOURNAL OF DAIRY SCIENCE

Genetic correlations among fertility traits and lactation persistency within and across Holstein herds with different milk production during the first three lactations✰

(2018) T. Yamazaki et al.   Livestock Science

Genomic-polygenic and polygenic predictions for milk yield, fat yield, and age at first calving in Thai multibreed dairy population using genic and functional sets of genotypes

(2018) Thawee Laodim et al.   Livestock Science

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB

(2018) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

CCL28 chemokine: An anchoring point bridging innate and adaptive immunity

(2017) Teena Mohan et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

A 100-Year Review: Identification and genetic selection of economically important traits in dairy cattle

(2017) Filippo Miglior et al.   JOURNAL OF DAIRY SCIENCE

Genome-wide association analysis and pathways enrichment for lactation persistency in Canadian Holstein cattle

(2017) D.N. Do et al.   JOURNAL OF DAIRY SCIENCE

Genome-wide association study for lactation persistency, female fertility, longevity, and lifetime profit index traits in Holstein dairy cattle

(2017) S. Nayeri et al.   JOURNAL OF DAIRY SCIENCE

Genome-wide Association Studies for Female Fertility Traits in Chinese and Nordic Holsteins

(2017) Aoxing Liu et al.   Scientific Reports

Performance Gains in Genome-Wide Association Studies for Longitudinal Traits via Modeling Time-varied effects

(2017) Chao Ning et al.   Scientific Reports

Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

(2016) Shadi Nayeri et al.   BMC GENETICS

Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

(2016) Bart Buitenhuis et al.   BMC GENETICS

Conceptus development and transcriptome at preimplantation stages in lactating dairy cows of distinct genetic groups and estrous cyclic statuses

(2016) E.S. Ribeiro et al.   JOURNAL OF DAIRY SCIENCE

Comparing power and precision of within-breed and multibreed genome-wide association studies of production traits using whole-genome sequence data for 5 French and Danish dairy cattle breeds

(2016) Irene van den Berg et al.   JOURNAL OF DAIRY SCIENCE

Causal relationships between clinical mastitis events, milk yields and lactation persistency in US Holsteins

(2016) K. Dhakal et al.   Livestock Science

Effect of sex, age and genetics on crossover interference in cattle

(2016) Zhiying Wang et al.   Scientific Reports

Genome-Wide Association Study Reveals the PLAG1 Gene for Knuckle, Biceps and Shank Weight in Simmental Beef Cattle

(2016) Yuxin Song et al.   PLoS One

Estimation of genetic parameters and detection of quantitative trait loci for minerals in Danish Holstein and Danish Jersey milk

(2015) Bart Buitenhuis et al.   BMC GENETICS

Prospecting major genes in dairy buffaloes

(2015) GMF de Camargo et al.   BMC GENOMICS

MC1R, KIT, IGF2, and NR6A1 as markers for genetic differentiation in Thai native, wild boars, and Duroc and Chinese Meishan pigs

(2015) P. Klomtong et al.   GENETICS AND MOLECULAR RESEARCH

Joint genome-wide association study for milk fatty acid traits in Chinese and Danish Holstein populations

(2015) X. Li et al.   JOURNAL OF DAIRY SCIENCE

Bovine subclinical intramammary infection caused by coagulase-negative staphylococci increases somatic cell count but has no effect on milk yield or composition

(2015) T. Tomazi et al.   JOURNAL OF DAIRY SCIENCE

Gene expression profile in zebu dairy cows (Bos taurus indicus) with mastitis caused by Streptococcus agalactiae

(2015) I. Fonseca et al.   Livestock Science

Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle

(2015) Lesley-Ann Raven et al.   MAMMALIAN GENOME

Genome-wide association and biological pathway analysis for milk-fat composition in Danish Holstein and Danish Jersey cattle

(2015) Bart Buitenhuis et al.   BMC GENOMICS

Multibreed genome wide association can improve precision of mapping causative variants underlying milk production in dairy cattle

(2014) Lesley-Ann Raven et al.   BMC GENOMICS

A new approach for efficient genotype imputation using information from relatives

(2014) Mehdi Sargolzaei et al.   BMC GENOMICS

Agreement between milk fat, protein, and lactose observations collected from the Dairy Herd Improvement Association (DHIA) and a real-time milk analyzer

(2014) K. Kaniyamattam et al.   JOURNAL OF DAIRY SCIENCE

Extent of linkage disequilibrium, consistency of gametic phase, and imputation accuracy within and across Canadian dairy breeds

(2014) S.G. Larmer et al.   JOURNAL OF DAIRY SCIENCE

Genetic correlations among female fertility, 305-day milk yield and persistency during the first three lactations of Japanese Holstein cows

(2014) T. Yamazaki et al.   Livestock Science

Fat depot-specific gene signature and ECM remodeling of Sca1high adipose-derived stem cells

(2014) Masakuni Tokunaga et al.   MATRIX BIOLOGY

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Advantages and pitfalls in the application of mixed-model association methods

(2014) Jian Yang et al.   NATURE GENETICS

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

(2013) Sarah D Cochran et al.   BMC GENETICS

Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland

(2012) Brian K Meredith et al.   BMC GENETICS

The relationship between fertility and lactation characteristics in Holstein cows on United Kingdom commercial dairy farms

(2012) B. Albarrán-Portillo et al.   JOURNAL OF DAIRY SCIENCE

Overexpression of miR-30b in the Developing Mouse Mammary Gland Causes a Lactation Defect and Delays Involution

(2012) Sandrine Le Guillou et al.   PLoS One

Accounting for multiple comparisons in a genome-wide association study (GWAS)

(2011) Randall C Johnson et al.   BMC GENOMICS

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

(2011) John B Cole et al.   BMC GENOMICS

Using the genomic relationship matrix to predict the accuracy of genomic selection

(2011) M.E. Goddard et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genetic and environmental relationships between body condition score and milk production traits in Canadian Holsteins

(2011) S. Loker et al.   JOURNAL OF DAIRY SCIENCE

Association between milk protein gene variants and protein composition traits in dairy cattle

(2011) W. Huang et al.   JOURNAL OF DAIRY SCIENCE

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A review of the causes of poor fertility in high milk producing dairy cows

(2010) S.W. Walsh et al.   ANIMAL REPRODUCTION SCIENCE

Database of cattle candidate genes and genetic markers for milk production and mastitis

(2009) J. Ogorevc et al.   ANIMAL GENETICS

Genetic evaluation of lactation persistency for five breeds of dairy cattle

(2009) J.B. Cole et al.   JOURNAL OF DAIRY SCIENCE

Invited Review: Reliability of genomic predictions for North American Holstein bulls

(2008) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE