CGRAP: A Web Server for Coarse-Grained Rigidity Analysis of Proteins

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

(2021) David Sehnal et al.   NUCLEIC ACIDS RESEARCH

Predicting the Effect of Single and Multiple Mutations on Protein Structural Stability

(2018) Ramin Dehghanpoor et al.   MOLECULES

Rigidity theory for biomolecules: concepts, software, and applications

(2017) Susanne M.A. Hermans et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

Perspective: Watching low-frequency vibrations of water in biomolecular recognition by THz spectroscopy

(2015) Yao Xu et al.   JOURNAL OF CHEMICAL PHYSICS

Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments

(2015) Tong Li et al.   PLoS Computational Biology

CABS-flex predictions of protein flexibility compared with NMR ensembles

(2014) Michal Jamroz et al.   BIOINFORMATICS

Protein-Carbohydrate Interactions Studied by NMR: From Molecular Recognition to Drug Design

(2013) Maria del Carmen Fernandez-Alonso et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Modeling Structures and Motions of Loops in Protein Molecules

(2012) Amarda Shehu et al.   Entropy

KINARI-Web: a server for protein rigidity analysis

(2011) N. Fox et al.   NUCLEIC ACIDS RESEARCH

Pebble game algorithms and sparse graphs

(2007) Audrey Lee et al.   DISCRETE MATHEMATICS