The Gene Rearrangement, Loss, Transfer, and Deep Intronic Variation in Mitochondrial Genomes of Conidiobolus

The first eleven mitochondrial genomes from the ectomycorrhizal fungal genus (Boletus) reveal intron loss and gene rearrangement

(2021) Qiang Li et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Comparative Mitogenomic Analysis Reveals Dynamics of Intron Within and Between Tricholoma Species and Phylogeny of Basidiomycota

(2021) Wenli Huang et al.   Frontiers in Genetics

The Mitochondrial Genome of a Plant Fungal Pathogen Pseudocercospora fijiensis (Mycosphaerellaceae), Comparative Analysis and Diversification Times of the Sigatoka Disease Complex Using Fossil Calibrated Phylogenies

(2021) Juliana E. Arcila-Galvis et al.   Life-Basel

Two New Species in the Family Cunninghamellaceae from China

(2021) Heng Zhao et al.   MYCOBIOLOGY

Taxonomy and Phylogeny of Four New Species in Absidia (Cunninghamellaceae, Mucorales) From China

(2021) Tong-Kai Zong et al.   Frontiers in Microbiology

Complete mitochondrial genome of Neoconidiobolus thromboides (Entomophthorales: Ancylistaceae)

(2021) Yong Nie et al.   Mitochondrial DNA Part B-Resources

The complete mitochondrial genome of Microconidiobolus nodosus (Entomophthorales: Ancylistaceae)

(2021) Yue Cai et al.   Mitochondrial DNA Part B-Resources

An Update on Trichoderma Mitogenomes: Complete De Novo Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma harzianum (Hypocreales, Sordariomycetes), an Ex-Neotype Strain CBS 226.95, and Tracing the Evolutionary Divergences of Mitogenomes in Trichoderma

(2021) Yunyoung Kwak   Microorganisms

Comparative Analyses of Mitochondrial Genomes Provide Evolutionary Insights Into Nematode-Trapping Fungi

(2020) Ying Zhang et al.   Frontiers in Microbiology

A taxonomic revision of the genus Conidiobolus (Ancylistaceae, Entomophthorales): four clades including three new genera

(2020) Yong Nie et al.   MycoKeys

Haplotype-based genome-wide association increases the predictability of leaf rust (Puccinia triticina) resistance in wheat

(2020) Fang Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Three new species of Conidiobolus sensu stricto from plant debris in eastern China

(2020) Yong Nie et al.   MycoKeys

The 287,403 bp Mitochondrial Genome of Ectomycorrhizal Fungus Tuber calosporum Reveals Intron Expansion, tRNA Loss, and Gene Rearrangement

(2020) Xiaolin Li et al.   Frontiers in Microbiology

Complete mitogenome of the entomopathogenic fungus Sporothrix insectorum RCEF 264 and comparative mitogenomics in Ophiostomatales

(2019) Shu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The complete mitochondrial genomes of two model ectomycorrhizal fungi (Laccaria): features, intron dynamics and phylogenetic implications

(2019) Qiang Li et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

The mitochondrial genome of Morchella importuna (272.2 kb) is the largest among fungi and contains numerous introns, mitochondrial non-conserved open reading frames and repetitive sequences

(2019) Wei Liu et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Comparative analysis of the mitochondrial genome of the fungus Colletotrichum lindemuthianum, the causal agent of anthracnose in common beans

(2018) Casley Borges de Queiroz et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The complete mitochondrial genome of the Dutch elm disease fungus Ophiostoma novo-ulmi subsp. novo-ulmi

(2018) Talal George Abboud et al.   CANADIAN JOURNAL OF MICROBIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny, evolution and mitochondrial gene order rearrangement in scale worms (Aphroditiformia, Annelida)

(2018) Yanjie Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The origin and adaptive evolution of domesticated populations of yeast from Far East Asia

(2018) Shou-Fu Duan et al.   Nature Communications

Fungal mitochondrial genomes and genetic polymorphisms

(2018) Sarah Sandor et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

(2018) Bart T. L. H. van de Vossenberg et al.   BMC EVOLUTIONARY BIOLOGY

Human Pathogenic Entomophthorales

(2018) Raquel Vilela et al.   CLINICAL MICROBIOLOGY REVIEWS

Mitochondrial genome, comparative analysis and evolutionary insights into the entomopathogenic fungus Hirsutella thompsonii

(2018) Lin Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Mitochondrial genome of the entomophthoroid fungus Conidiobolus heterosporus provides insights into evolution of basal fungi

(2018) Yong Nie et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization and comparative analysis of six complete mitochondrial genomes from ectomycorrhizal fungi of the Lactarius genus and phylogenetic analysis of the Agaricomycetes

(2018) Qiang Li et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

The complete mitochondrial genome of Engyodontium album and comparative analyses with Ascomycota mitogenomes

(2017) Xiao-Long Yuan et al.   GENETICS AND MOLECULAR BIOLOGY

Comparative assessment of SSR and SNP markers for inferring the population genetic structure of the common fungus Armillaria cepistipes

(2017) T Tsykun et al.   HEREDITY

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

The mitochondrial genome of the plant-pathogenic fungus Stemphylium lycopersici uncovers a dynamic structure due to repetitive and mobile elements

(2017) Mario Emilio Ernesto Franco et al.   PLoS One

Mitochondrial comparative genomics and phylogenetic signal assessment of mtDNA among arbuscular mycorrhizal fungi

(2016) Maryam Nadimi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

(2016) Joseph W. Spatafora et al.   MYCOLOGIA

NOVOPlasty:de novoassembly of organelle genomes from whole genome data

(2016) Nicolas Dierckxsens et al.   NUCLEIC ACIDS RESEARCH

Rapid and Effective DNA Extraction Method with Bead Grinding for a Large Amount of Fungal DNA

(2016) M. WATANABE et al.   JOURNAL OF FOOD PROTECTION

Mitochondrial genome evolution in yeasts: an all-encompassing view

(2015) Kelle C. Freel et al.   FEMS YEAST RESEARCH

Endosymbiotic theories for eukaryote origin

(2015) William F. Martin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

High Variability of Mitochondrial Gene Order among Fungi

(2014) Gabriela Aguileta et al.   Genome Biology and Evolution

Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny

(2013) Stephen L. Cameron   Annual Review of Entomology

Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia

(2013) Timothy Y. James et al.   CURRENT BIOLOGY

The 135 kbp mitochondrial genome of Agaricus bisporus is the largest known eukaryotic reservoir of group I introns and plasmid-related sequences

(2013) Cyril Férandon et al.   FUNGAL GENETICS AND BIOLOGY

Comparative analysis of mitochondrial genomes from closely related Rhynchosporium species reveals extensive intron invasion

(2013) Stefano F.F. Torriani et al.   FUNGAL GENETICS AND BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic lineages in Entomophthoromycota

(2013) A.P. Gryganskyi et al.   PERSOONIA

Rapid Mitochondrial Genome Evolution through Invasion of Mobile Elements in Two Closely Related Species of Arbuscular Mycorrhizal Fungi

(2013) Denis Beaudet et al.   PLoS One

Entomophthoromycota: a new phylum and reclassification for entomophthoroid fungi

(2012) Richard A. Humber   MYCOTAXON

The mitochondrial genome of the arbuscular mycorrhizal fungusGigaspora margaritareveals two unsuspectedtrans-splicing events of group I introns

(2012) Adrian Pelin et al.   NEW PHYTOLOGIST

Comparative Mitochondrial Genomics within and among Yeast Species of the Lachancea Genus

(2012) Anne Friedrich et al.   PLoS One

SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

(2010) Gaurav Vaidya et al.   CLADISTICS

The Agaricus bisporus cox1 Gene: The Longest Mitochondrial Gene and the Largest Reservoir of Mitochondrial Group I Introns

(2010) Cyril Férandon et al.   PLoS One

Morphologic and Phylogenetic Characterization of Conidiobolus lamprauges Recovered from Infected Sheep

(2009) R. Vilela et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Molecular Evolution of the mtDNA Encoded rps3 Gene Among Filamentous Ascomycetes Fungi with an Emphasis on the Ophiostomatoid Fungi

(2009) Jyothi Sethuraman et al.   JOURNAL OF MOLECULAR EVOLUTION