Epigenetic adaptations of the masticatory mucosa to periodontal inflammation

Estimands in epigenome-wide association studies

(2021) Jochen Kruppa et al.   Clinical Epigenetics

Differential DNA methylation and mRNA transcription in gingival tissues in periodontal health and disease

(2021) Hyunjin Kim et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers

(2019) Gesa M. Richter et al.   Clinical Epigenetics

JNK-mediated Slit-Robo signaling facilitates epithelial wound repair by extruding dying cells

(2019) Chiaki Iida et al.   Scientific Reports

A chemical genetics approach identifies PTP4A3 as a regulator of colon cancer cell adhesion

(2018) Kelley E. McQueeney et al.   FASEB JOURNAL

A novel cell-type deconvolution algorithm reveals substantial contamination by immune cells in saliva, buccal and cervix

(2018) Shijie C Zheng et al.   Epigenomics

Variation in DNA Methylation of Human Blood over a 1-Year Period using the Illumina MethylationEPIC array

(2018) Ina Zaimi et al.   Epigenetics

Genome-wide association meta-analysis of coronary artery disease and periodontitis reveals a novel shared risk locus

(2018) Matthias Munz et al.   Scientific Reports

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019

(2018) Annalisa Buniello et al.   NUCLEIC ACIDS RESEARCH

PRL-3/PTP4A3 phosphatase regulates integrin β1 in adhesion structures during migration of human ocular melanoma cells

(2017) Malika Foy et al.   EXPERIMENTAL CELL RESEARCH

Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers

(2017) Theresa Ryan Stueve et al.   HUMAN MOLECULAR GENETICS

Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA

(2017) Shicheng Guo et al.   NATURE GENETICS

BatchQC: interactive software for evaluating sample and batch effects in genomic data

(2016) Solaiappan Manimaran et al.   BIOINFORMATICS

Pre-neoplastic epigenetic disruption of transcriptional enhancers in chronic inflammation

(2016) Aline C. Planello et al.   Oncotarget

missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform

(2015) Belinda Phipson et al.   BIOINFORMATICS

Update on Prevalence of Periodontitis in Adults in the United States: NHANES 2009 to 2012

(2015) Paul I. Eke et al.   JOURNAL OF PERIODONTOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Molecular aspects of the pathogenesis of periodontitis

(2015) Joerg Meyle et al.   PERIODONTOLOGY 2000

Correlation of Smoking-Associated DNA Methylation Changes in Buccal Cells With DNA Methylation Changes in Epithelial Cancer

(2015) Andrew E. Teschendorff et al.   JAMA Oncology

Interpreting the language of histone and DNA modifications

(2014) Scott B. Rothbart et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

(2014) Martin J. Aryee et al.   BIOINFORMATICS

Protein-tyrosine Phosphatase 4A3 (PTP4A3) Promotes Vascular Endothelial Growth Factor Signaling and Enables Endothelial Cell Motility

(2014) Mark W. Zimmerman et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The large non-coding RNA ANRIL, which is associated with atherosclerosis, periodontitis and several forms of cancer, regulates ADIPOR1, VAMP3 and C11ORF10

(2013) Gregor Bochenek et al.   HUMAN MOLECULAR GENETICS

Genome-wide association study of chronic periodontitis in a general German population

(2013) Alexander Teumer et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies

(2012) Andrew E Jaffe et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Genome-wide Association Study of Periodontal Pathogen Colonization

(2012) K. Divaris et al.   JOURNAL OF DENTAL RESEARCH

Prevalence of Periodontitis in Adults in the United States: 2009 and 2010

(2012) P.I. Eke et al.   JOURNAL OF DENTAL RESEARCH

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

The keystone-pathogen hypothesis

(2012) George Hajishengallis et al.   NATURE REVIEWS MICROBIOLOGY

Resolution-associated molecular patterns (RAMP): RAMParts defending immunological homeostasis?

(2011) A. M. Shields et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Epigenome-wide association studies for common human diseases

(2011) Vardhman K. Rakyan et al.   NATURE REVIEWS GENETICS

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

(2010) Pan Du et al.   BMC BIOINFORMATICS

Epigenetic Mechanisms in Inflammation

(2010) D. Bayarsaihan   JOURNAL OF DENTAL RESEARCH

LIM domain-containing adaptor, leupaxin, localizes in focal adhesion and suppresses the integrin-induced tyrosine phosphorylation of paxillin

(2009) Toshiyuki Tanaka et al.   CANCER SCIENCE

Gingivitis as a risk factor in periodontal disease

(2009) Niklaus P. Lang et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

Down-modulation of keratin 8 phosphorylation levels by PRL-3 contributes to colorectal carcinoma progression

(2008) Eri Mizuuchi et al.   INTERNATIONAL JOURNAL OF CANCER