Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment
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Title
Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment
Authors
Keywords
Microbiome, Inflammation, Metabolomics, Metabolites, Lactobacillus, Biomarkers, Cervical cancer, Cancers and neoplasms
Journal
PLoS Computational Biology
Volume 18, Issue 2, Pages e1009876
Publisher
Public Library of Science (PLoS)
Online
2022-02-24
DOI
10.1371/journal.pcbi.1009876
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Note: Only part of the references are listed.- RESCRIPt: Reproducible sequence taxonomy reference database management
- (2021) Michael S. Robeson et al. PLoS Computational Biology
- The microbiome and gynaecological cancer development, prevention and therapy
- (2020) Paweł Łaniewski et al. Nature Reviews Urology
- The vaginal microbiota associates with the regression of untreated cervical intraepithelial neoplasia 2 lesions
- (2020) Anita Mitra et al. Nature Communications
- Cervicovaginal microbiome and natural history of HPV in a longitudinal study
- (2020) Mykhaylo Usyk et al. PLoS Pathogens
- Deep in the Bowel: Highly Interpretable Neural Encoder-Decoder Networks Predict Gut Metabolites from Gut Microbiome
- (2020) Vuong Le et al. BMC GENOMICS
- Microbiome definition re-visited: old concepts and new challenges
- (2020) Gabriele Berg et al. Microbiome
- The Integrative Human Microbiome Project
- (2019) NATURE
- Deciphering the complex interplay between microbiota, HPV, inflammation and cancer through cervicovaginal metabolic profiling
- (2019) Zehra Esra Ilhan et al. EBioMedicine
- The vaginal microbiota, human papillomavirus and cervical dysplasia: a systematic review and network meta‐analysis
- (2019) J Norenhag et al. BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY
- Association between the vaginal microbiome and high-risk human papillomavirus infection in pregnant Chinese women
- (2019) Yulian Chen et al. BMC INFECTIOUS DISEASES
- Population-level impact and herd effects following the introduction of human papillomavirus vaccination programmes: updated systematic review and meta-analysis
- (2019) Mélanie Drolet et al. LANCET
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
- (2019) Evan Bolyen et al. NATURE BIOTECHNOLOGY
- Defining characteristics of genital health in South African adolescent girls and young women at high risk for HIV infection
- (2019) Smritee Dabee et al. PLoS One
- Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences
- (2019) Himel Mallick et al. Nature Communications
- Features of the cervicovaginal microenvironment drive cancer biomarker signatures in patients across cervical carcinogenesis
- (2019) Paweł Łaniewski et al. Scientific Reports
- The Cervicovaginal Microbiota-Host Interaction Modulates Chlamydia trachomatis Infection
- (2019) Vonetta L. Edwards et al. mBio
- A field guide for the compositional analysis of any-omics data
- (2019) Thomas P Quinn et al. GigaScience
- The vaginal metabolome and microbiota of cervical HPV‐positive and HPV‐negative women: a cross‐sectional analysis
- (2019) JC Borgogna et al. BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY
- Learning representations of microbe–metabolite interactions
- (2019) James T. Morton et al. NATURE METHODS
- Species abundance information improves sequence taxonomy classification accuracy
- (2019) Benjamin D. Kaehler et al. Nature Communications
- Interplay between the human gut microbiome and host metabolism
- (2019) Alessia Visconti et al. Nature Communications
- Estimates of incidence and mortality of cervical cancer in 2018: a worldwide analysis
- (2019) Marc Arbyn et al. Lancet Global Health
- Cervicovaginal Microbiota and Reproductive Health: The Virtue of Simplicity
- (2018) Melis N. Anahtar et al. Cell Host & Microbe
- Macrophage Migration Inhibitory Factor - A Favorable Marker in Inflammatory Diseases?
- (2018) Johannes Hertelendy et al. CURRENT MEDICINAL CHEMISTRY
- Metabolomic Signature of Endometrial Cancer
- (2018) Jacopo Troisi et al. JOURNAL OF PROTEOME RESEARCH
- HPV infection and bacterial microbiota in the placenta, uterine cervix and oral mucosa
- (2018) Heidi Tuominen et al. Scientific Reports
- In vivo microbiome and associated immune markers: New insights into the pathogenesis of vaginal dysbiosis
- (2018) Giuseppina Campisciano et al. Scientific Reports
- Linking cervicovaginal immune signatures, HPV and microbiota composition in cervical carcinogenesis in non-Hispanic and Hispanic women
- (2018) Paweł Łaniewski et al. Scientific Reports
- Cigarette smoking is associated with an altered vaginal tract metabolomic profile
- (2018) T. M. Nelson et al. Scientific Reports
- Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
- (2018) Nicholas A. Bokulich et al. Microbiome
- A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- (2018) Donovan H Parks et al. NATURE BIOTECHNOLOGY
- Cervicovaginal Fungi and Bacteria Associated With Cervical Intraepithelial Neoplasia and High-Risk Human Papillomavirus Infections in a Hispanic Population
- (2018) Filipa Godoy-Vitorino et al. Frontiers in Microbiology
- Association of HPV infection and clearance with cervicovaginal immunology and the vaginal microbiota
- (2017) B Shannon et al. Mucosal Immunology
- Lactobacillus iners : Friend or Foe?
- (2017) Mariya I. Petrova et al. TRENDS IN MICROBIOLOGY
- Evasion of host immune defenses by human papillomavirus
- (2017) Joseph A. Westrich et al. VIRUS RESEARCH
- Natural History of HPV Infection across the Lifespan: Role of Viral Latency
- (2017) Patti Gravitt et al. Viruses-Basel
- Characterization of cervico-vaginal microbiota in women developing persistent high-risk Human Papillomavirus infection
- (2017) Monica Di Paola et al. Scientific Reports
- The Human Microbiome during Bacterial Vaginosis
- (2016) Andrew B. Onderdonk et al. CLINICAL MICROBIOLOGY REVIEWS
- The Vaginal Microbiome: Current Understanding and Future Directions
- (2016) David H. Martin et al. JOURNAL OF INFECTIOUS DISEASES
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Female genital tract inflammation, HIV co-infection and persistent mucosal Human Papillomavirus (HPV) infections
- (2016) Jean-Mari Kriek et al. VIROLOGY
- Cervical Microbiome and Cytokine Profile at Various Stages of Cervical Cancer: A Pilot Study
- (2016) Astride Audirac-Chalifour et al. PLoS One
- Accumulated Metabolites of Hydroxybutyric Acid Serve as Diagnostic and Prognostic Biomarkers of Ovarian High-Grade Serous Carcinomas
- (2015) M. Hilvo et al. CANCER RESEARCH
- The association of uterine cervical microbiota with an increased risk for cervical intraepithelial neoplasia in Korea
- (2015) H.Y. Oh et al. CLINICAL MICROBIOLOGY AND INFECTION
- Inflammatory cytokine biomarkers to identify women with asymptomatic sexually transmitted infections and bacterial vaginosis who are at high risk of HIV infection
- (2015) Lindi Masson et al. SEXUALLY TRANSMITTED INFECTIONS
- Macrophage immigration inhibitory factor promotes cell proliferation and inhibits apoptosis of cervical adenocarcinoma
- (2015) Peng Guo et al. TUMOR BIOLOGY
- Metabolic Signatures of Bacterial Vaginosis
- (2015) Sujatha Srinivasan et al. mBio
- Cervical intraepithelial neoplasia disease progression is associated with increased vaginal microbiome diversity
- (2015) A. Mitra et al. Scientific Reports
- Metabolome of human gut microbiome is predictive of host dysbiosis
- (2015) Peter E. Larsen et al. GigaScience
- Interplay Between the Temporal Dynamics of the Vaginal Microbiota and Human Papillomavirus Detection
- (2014) R. M. Brotman et al. JOURNAL OF INFECTIOUS DISEASES
- Sphingolipid metabolites in inflammatory disease
- (2014) Michael Maceyka et al. NATURE
- Comparison of the vaginal microbiota diversity of women with and without human papillomavirus infection: a cross-sectional study
- (2013) Weijiao Gao et al. BMC INFECTIOUS DISEASES
- Proton magnetic resonance metabolomic characterization of ovarian serous carcinoma effusions: chemotherapy-related effects and comparison with malignant mesothelioma and breast carcinoma
- (2013) Riyas Vettukattil et al. HUMAN PATHOLOGY
- Association of the Vaginal Microbiota with Human Papillomavirus Infection in a Korean Twin Cohort
- (2013) Jung Eun Lee et al. PLoS One
- Influence of Vaginal Bacteria and D- and L-Lactic Acid Isomers on Vaginal Extracellular Matrix Metalloproteinase Inducer: Implications for Protection against Upper Genital Tract Infections
- (2013) S. S. Witkin et al. mBio
- Bacterial vaginosis is conducive to the persistence of HPV infection
- (2012) Y-l Guo et al. INTERNATIONAL JOURNAL OF STD & AIDS
- Temporal Dynamics of the Human Vaginal Microbiota
- (2012) P. Gajer et al. Science Translational Medicine
- Cervical Intraepithelial Neoplasia Is Associated With Genital Tract Mucosal Inflammation
- (2012) Mohak Mhatre et al. SEXUALLY TRANSMITTED DISEASES
- Bacterial vaginosis is associated with uterine cervical human papillomavirus infection: a meta-analysis
- (2011) Evy Gillet et al. BMC INFECTIOUS DISEASES
- Expression of Macrophage Migration Inhibitory Factor and CD74 in Cervical Squamous Cell Carcinoma
- (2011) Rong-jie Cheng et al. INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER
- An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
- (2011) Daniel McDonald et al. ISME Journal
- Vaginal microbiome of reproductive-age women
- (2010) J. Ravel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Macrophage migration inhibitory factor expression in cervical cancer
- (2009) Mathias Krockenberger et al. JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY
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