Whole-genome assembly of Ganoderma leucocontextum (Ganodermataceae, Fungi) discovered from the Tibetan Plateau of China

antiSMASH 6.0: improving cluster detection and comparison capabilities

(2021) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Dynamics of Genes Purportedly Involved in the Control of Meiosis, Carbohydrate, and Secondary Metabolism during Sporulation in Ganoderma lucidum

(2021) Manjun Cai et al.   Genes

Whole genome sequence of an edible and medicinal mushroom, Hericium erinaceus (Basidiomycota, Fungi)

(2020) Wenbing Gong et al.   GENOMICS

Lanostane triterpenoids with anti-inflammatory activities from Ganoderma lucidum

(2020) Hai-Guo Su et al.   PHYTOCHEMISTRY

Structural characterization and immunomodulatory activity of a water-soluble polysaccharide from Ganoderma leucocontextum fruiting bodies

(2020) Xiong Gao et al.   CARBOHYDRATE POLYMERS

Genome Assembly and Pathway Analysis of Edible Mushroom Agrocybe cylindracea

(2020) Yuan Liang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Ganoderiol F purified from Ganoderma leucocontextum retards cell cycle progression by inhibiting CDK4/CDK6

(2019) Xiangmin Li et al.   CELL CYCLE

KEGG Mapper for inferring cellular functions from protein sequences

(2019) Minoru Kanehisa et al.   PROTEIN SCIENCE

Genomic Analyses Reveal Evidence of Independent Evolution, Demographic History, and Extreme Environment Adaptation of Tibetan Plateau Agaricus bisporus

(2019) Lei Sun et al.   Frontiers in Microbiology

The whole-genome sequence analysis of Morchella sextelata

(2019) Mei-Han et al.   Scientific Reports

OUP accepted manuscript

(2018)   BIOINFORMATICS

Triterpenes and Meroterpenes with Neuroprotective Effects from Ganoderma leucocontextum

(2018) Hongyu Chen et al.   CHEMISTRY & BIODIVERSITY

Noncoding RNAs in disease

(2018) Evangelia Lekka et al.   FEBS LETTERS

The natural compound GL22, isolated from Ganoderma mushrooms, suppresses tumor growth by altering lipid metabolism and triggering cell death

(2018) Ge Liu et al.   Cell Death & Disease

Whole Genome Sequence of an Edible and Potential Medicinal Fungus, Cordyceps guangdongensis

(2018) Chenghua Zhang et al.   G3-Genes Genomes Genetics

Eight new triterpenoids with inhibitory activity against HMG-CoA reductase from the medical mushroom Ganoderma leucocontextum collected in Tibetan plateau

(2018) Jinjin Zhang et al.   FITOTERAPIA

A novel class of α-glucosidase and HMG-CoA reductase inhibitors from Ganoderma leucocontextum and the anti-diabetic properties of ganomycin I in KK-A y mice

(2017) Kai Wang et al.   EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY

Whole genome sequence of Auricularia heimuer (Basidiomycota, Fungi), the third most important cultivated mushroom worldwide

(2017) Yuan Yuan et al.   GENOMICS

Triterpenoid biosynthesis and the transcriptional response elicited by nitric oxide in submerged fermenting Ganoderma lucidum

(2017) Li Gu et al.   PROCESS BIOCHEMISTRY

Ganoderma

(2016) Nebojša V. Kladar et al.   EUROPEAN JOURNAL OF CANCER PREVENTION

Leucocontextins A–R, lanostane-type triterpenoids from Ganoderma leucocontextum

(2016) Zhen-Zhu Zhao et al.   FITOTERAPIA

Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes

(2016) Donghwan Shim et al.   JOURNAL OF BIOTECHNOLOGY

Using intron position conservation for homology-based gene prediction

(2016) Jens Keilwagen et al.   NUCLEIC ACIDS RESEARCH

Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction

(2016) Kathryn Winglee et al.   PLoS Neglected Tropical Diseases

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Lanostane Triterpenes from the Tibetan Medicinal Mushroom Ganoderma leucocontextum and Their Inhibitory Effects on HMG-CoA Reductase and α-Glucosidase

(2015) Kai Wang et al.   JOURNAL OF NATURAL PRODUCTS

Ganoderma leucocontextum, a new member of the G. lucidum complex from southwestern China

(2015) Tai-Hui Li et al.   MYCOSCIENCE

From 2000years of Ganoderma lucidum to recent developments in nutraceuticals

(2015) Karen S. Bishop et al.   PHYTOCHEMISTRY

Indexing Graphs for Path Queries with Applications in Genome Research

(2014) Jouni Siren et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Mushrooms: A Potential Natural Source of Anti-Inflammatory Compounds for Medical Applications

(2014) Elsayed A. Elsayed et al.   MEDIATORS OF INFLAMMATION

A Comprehensive Review of the Structure Elucidation and Biological Activity of Triterpenoids from Ganoderma spp.

(2014) Qing Xia et al.   MOLECULES

Traversing the fungal terpenome

(2014) Maureen B. Quin et al.   NATURAL PRODUCT REPORTS

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Agaricus bisporus genome sequence: A commentary

(2013) Richard W. Kerrigan et al.   FUNGAL GENETICS AND BIOLOGY

Species clarification of the prize medicinal Ganoderma mushroom “Lingzhi”

(2012) Yun Cao et al.   FUNGAL DIVERSITY

Genome mining reveals the evolutionary origin and biosynthetic potential of basidiomycete polyketide synthases

(2012) Gerald Lackner et al.   FUNGAL GENETICS AND BIOLOGY

The Genome of Ganderma lucidum Provide Insights into Triterpense Biosynthesis and Wood Degradation

(2012) Dongbo Liu et al.   PLoS One

Genome sequence of the model medicinal mushroom Ganoderma lucidum

(2012) Shilin Chen et al.   Nature Communications

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom

(2011) Feng Chen et al.   PLANT JOURNAL

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

(2011) Peng Zheng et al.   GENOME BIOLOGY

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

genBlastA: Enabling BLAST to identify homologous gene sequences

(2008) R. She et al.   GENOME RESEARCH

Thioesterase-Like Role for Fungal PKS-NRPS Hybrid Reductive Domains

(2008) James W. Sims et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY