Impacts of environmental stress on resistance and resilience of algal‐associated bacterial communities

A Multi-Omics Analysis Suggests Links Between the Differentiated Surface Metabolome and Epiphytic Microbiota Along the Thallus of a Mediterranean Seaweed Holobiont

(2020) Benoît Paix et al.   Frontiers in Microbiology

Detecting and correcting misclassified sequences in the large-scale public databases

(2020) Hamid Bagheri et al.   BIOINFORMATICS

Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp

(2019) Zhiguang Qiu et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Future evolution of Marine Heatwaves in the Mediterranean Sea

(2019) Sofia Darmaraki et al.   CLIMATE DYNAMICS

Microbial “gardening” by a seaweed holobiont: Surface metabolites attract protective and deter pathogenic epibacterial settlement

(2019) Mahasweta Saha et al.   JOURNAL OF ECOLOGY

Disentangling the Influence of Environment, Host Specificity and Thallus Differentiation on Bacterial Communities in Siphonous Green Seaweeds

(2019) Kathryn Lee Morrissey et al.   Frontiers in Microbiology

Climate Change, Human Impacts, and Coastal Ecosystems in the Anthropocene

(2019) Qiang He et al.   CURRENT BIOLOGY

Functional biogeography and host specificity of bacterial communities associated with the Marine Green Alga Ulva spp.

(2018) Alexandra J. Roth-Schulze et al.   MOLECULAR ECOLOGY

Current understanding of the human microbiome

(2018) Jack A Gilbert et al.   NATURE MEDICINE

Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption

(2018) Jeremiah J. Minich et al.   PLoS One

Longer and more frequent marine heatwaves over the past century

(2018) Eric C. J. Oliver et al.   Nature Communications

Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience

(2018) Dinka Mandakovic et al.   Scientific Reports

Exploring the diversity-stability paradigm using sponge microbial communities

(2018) Bettina Glasl et al.   Scientific Reports

The sponge holobiont in a changing ocean: from microbes to ecosystems

(2018) L. Pita et al.   Microbiome

Taxa-function robustness in microbial communities

(2018) Alexander Eng et al.   Microbiome

The hologenome concept of evolution after 10 years

(2018) Eugene Rosenberg et al.   Microbiome

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry

(2018) Zishu Liu et al.   mSphere

Coastal urbanisation affects microbial communities on a dominant marine holobiont

(2018) Ezequiel M. Marzinelli et al.   npj Biofilms and Microbiomes

Summer shifts of bacterial communities associated with the invasive brown seaweed Sargassum muticum are location and tissue dependent

(2018) Alexandra Serebryakova et al.   PLoS One

Nutrient Fluctuations in Marine Systems: Press Versus Pulse Nutrient Subsidies Affect Producer Competition and Diversity in Estuaries and Coral Reefs

(2017) Caitlin R. Fong et al.   Estuaries and Coasts

Microbial contributions to the persistence of coral reefs

(2017) Nicole S Webster et al.   ISME Journal

Interactive effects of marine heatwaves and eutrophication on the ecophysiology of a widespread and ecologically important macroalga

(2017) Lidiane Pires Gouvêa et al.   LIMNOLOGY AND OCEANOGRAPHY

Entangled fates of holobiont genomes during invasion: nested bacterial and host diversities in Caulerpa taxifolia

(2017) S. Arnaud-Haond et al.   MOLECULAR ECOLOGY

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

(2017) Mathieu Groussin et al.   Nature Communications

Microbial Extracellular Polymeric Substances (EPSs) in Ocean Systems

(2017) Alan W. Decho et al.   Frontiers in Microbiology

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

Universality of human microbial dynamics

(2016) Amir Bashan et al.   NATURE

A hierarchical approach to defining marine heatwaves

(2016) Alistair J. Hobday et al.   PROGRESS IN OCEANOGRAPHY

Climate-driven regime shift of a temperate marine ecosystem

(2016) T. Wernberg et al.   SCIENCE

The Sponge Hologenome

(2016) Nicole S. Webster et al.   mBio

Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts

(2016) Angela E. Douglas et al.   mBio

Restructuring of Epibacterial Communities on Fucus vesiculosus forma mytili in Response to Elevated pCO2 and Increased Temperature Levels

(2016) Birte Mensch et al.   Frontiers in Microbiology

Host and Environmental Specificity in Bacterial Communities Associated to Two Highly Invasive Marine Species (Genus Asparagopsis)

(2016) Tânia Aires et al.   Frontiers in Microbiology

Diversity and Temporal Dynamics of the Epiphytic Bacterial Communities Associated with the Canopy-Forming Seaweed Cystoseira compressa (Esper) Gerloff and Nizamuddin

(2016) Francesco P. Mancuso et al.   Frontiers in Microbiology

Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography

(2015) Ezequiel M. Marzinelli et al.   ENVIRONMENTAL MICROBIOLOGY

Host–microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures

(2015) Simon M Dittami et al.   ISME Journal

Spreading patterns of the invasive Caulerpa cylindracea Sonder along the west Istrian Coast (northern Adriatic Sea, Croatia)

(2015) Ljiljana Iveša et al.   MARINE ENVIRONMENTAL RESEARCH

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

A comprehensive analysis of the microbial communities of healthy and diseased marine macroalgae and the detection of known and potential bacterial pathogens

(2015) Enrique Zozaya-Valdes et al.   Frontiers in Microbiology

Spatial variability of microbial assemblages associated with a dominant habitat-forming seaweed

(2015) Alexandra H. Campbell et al.   Frontiers in Microbiology

Host-specific microbial communities in three sympatric North Sea sponges

(2014) Mohd Azrul Naim et al.   FEMS MICROBIOLOGY ECOLOGY

Identifying the interacting roles of stressors in driving the global loss of canopy-forming to mat-forming algae in marine ecosystems

(2014) Elisabeth M. A. Strain et al.   GLOBAL CHANGE BIOLOGY

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dramatically increasing chance of extremely hot summers since the 2003 European heatwave

(2014) Nikolaos Christidis et al.   Nature Climate Change

Bacterial pathogens, virulence mechanism and host defence in marine macroalgae

(2013) Suhelen Egan et al.   ENVIRONMENTAL MICROBIOLOGY

Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities

(2013) Alissa S. Hanshew et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Host specificity and coevolution of Flavobacteriaceae endosymbionts within the siphonous green seaweed Bryopsis

(2013) Joke Hollants et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Invasion Is a Community Affair: Clandestine Followers in the Bacterial Community Associated to Green Algae, Caulerpa racemosa, Track the Invasion Source

(2013) Tania Aires et al.   PLoS One

Distinct antimicrobial peptide expression determines host species-specific bacterial associations

(2013) S. Franzenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Permanent residents or temporary lodgers: characterizing intracellular bacterial communities in the siphonous green alga Bryopsis

(2013) J. Hollants et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Marked reduction of eutrophication pressure in the northeastern Adriatic in the period 2000–2009

(2012) Tamara Djakovac et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Increasing frequency, intensity and duration of observed global heatwaves and warm spells

(2012) S. E. Perkins et al.   GEOPHYSICAL RESEARCH LETTERS

SELECTIVE ELIMINATION OF CHLOROPLASTIDIAL DNA FOR METAGENOMICS OF BACTERIA ASSOCIATED WITH THE GREEN ALGA CAULERPA TAXIFOLIA (BRYOPSIDOPHYCEAE)1

(2012) Tânia Aires et al.   JOURNAL OF PHYCOLOGY

The Second Skin: Ecological Role of Epibiotic Biofilms on Marine Organisms

(2012) Martin Wahl et al.   Frontiers in Microbiology

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Living inside plants: bacterial endophytes

(2011) Barbara Reinhold-Hurek et al.   CURRENT OPINION IN PLANT BIOLOGY

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Climate change and disease: bleaching of a chemically defended seaweed

(2011) ALEXANDRA H. CAMPBELL et al.   GLOBAL CHANGE BIOLOGY

Increase of extreme events in a warming world

(2011) S. Rahmstorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal dynamics of bacterial biofilms on the kelp Laminaria hyperborea

(2010) MM Bengtsson et al.   AQUATIC MICROBIAL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Temperature induced bacterial virulence and bleaching disease in a chemically defended marine macroalga

(2010) Rebecca J. Case et al.   ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Improving indicator species analysis by combining groups of sites

(2010) Miquel De Cáceres et al.   OIKOS

Impacts of a simulated heat wave on composition of a marine community

(2010) Cascade J. B. Sorte et al.   OIKOS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

How endo- is endo-? Surface sterilization of delicate samples: a Bryopsis (Bryopsidales, Chlorophyta) case study

(2010) Joke Hollants et al.   SYMBIOSIS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

(2009) C. Fraser et al.   SCIENCE

Microbial associations in gut systems of wood- and bark-inhabiting longhorned beetles [Coleoptera: Cerambycidae]

(2009) S. Grünwald et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Mechanisms and assessment of water eutrophication

(2008) Xiao-e Yang et al.   Journal of Zhejiang University-SCIENCE B

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

'Til death do us part': coming to terms with symbiotic relationships

(2008) David A. Relman   NATURE REVIEWS MICROBIOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA