Mutations that adapt SARS-CoV-2 to mink or ferret do not increase fitness in the human airway

Intranasal Infection of Ferrets with SARS-CoV-2 as a Model for Asymptomatic Human Infection

(2021) Helen E. Everett et al.   Viruses-Basel

Stabilizing the closed SARS-CoV-2 spike trimer

(2021) Jarek Juraszek et al.   Nature Communications

Multiple SARS-CoV-2 variants escape neutralization by vaccine-induced humoral immunity

(2021) Wilfredo F. Garcia-Beltran et al.   CELL

Preliminary report of an outbreak of SARS-CoV-2 in mink and mink farmers associated with community spread, Denmark, June to November 2020

(2021) Helle Daugaard Larsen et al.   Eurosurveillance

The SARS-CoV-2 Y453F mink variant displays a pronounced increase in ACE-2 affinity but does not challenge antibody neutralization

(2021) Rafael Bayarri-Olmos et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SARS-CoV-2 triggers an MDA-5-dependent interferon response which is unable to control replication in lung epithelial cells

(2021) Antoine Rebendenne et al.   JOURNAL OF VIROLOGY

Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein

(2021) Houriiyah Tegally et al.   NATURE

SARS-CoV-2 lateral flow assays for possible use in national covid-19 seroprevalence surveys (React 2): diagnostic accuracy study

(2021) Maya Moshe et al.   BMJ-British Medical Journal

A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research

(2021) Suzannah J. Rihn et al.   PLOS BIOLOGY

SARS-CoV-2 one year on: evidence for ongoing viral adaptation

(2021) Thomas P. Peacock et al.   JOURNAL OF GENERAL VIROLOGY

SARS-CoV-2 mutations acquired in mink reduce antibody-mediated neutralization

(2021) Markus Hoffmann et al.   Cell Reports

The furin cleavage site in the SARS-CoV-2 spike protein is required for transmission in ferrets

(2021) Thomas P. Peacock et al.   Nature Microbiology

Humoral and T-cell responses to SARS-CoV-2 vaccination in patients receiving immunosuppression

(2021) Maria Prendecki et al.   ANNALS OF THE RHEUMATIC DISEASES

SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity

(2021) Chihiro Motozono et al.   Cell Host & Microbe

2020 Hindsight: Should evolutionary virologists have expected the unexpected during a pandemic?

(2021) Daniel H. Goldhill et al.   EVOLUTION

Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7

(2021) Bo Meng et al.   Cell Reports

In vitro Characterization of Fitness and Convalescent Antibody Neutralization of SARS-CoV-2 Cluster 5 Variant Emerging in Mink at Danish Farms

(2021) Ria Lassaunière et al.   Frontiers in Microbiology

Assignment of Epidemiological Lineages in an Emerging Pandemic Using the Pangolin Tool

(2021) Áine O’Toole et al.   Virus Evolution

Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR

(2020) Victor M Corman et al.   Eurosurveillance

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

Structural basis for the recognition of the SARS-CoV-2 by full-length human ACE2

(2020) Renhong Yan et al.   SCIENCE

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor

(2020) Markus Hoffmann et al.   CELL

Infection and Rapid Transmission of SARS-CoV-2 in Ferrets

(2020) Young-Il Kim et al.   Cell Host & Microbe

A Multibasic Cleavage Site in the Spike Protein of SARS-CoV-2 Is Essential for Infection of Human Lung Cells

(2020) Markus Hoffmann et al.   MOLECULAR CELL

Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform

(2020) Tran Thi Nhu Thao et al.   NATURE

Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

(2020) Tyler N. Starr et al.   CELL

Investigating SARS-CoV-2 surface and air contamination in an acute healthcare setting during the peak of the COVID-19 pandemic in London

(2020) Jie Zhou et al.   CLINICAL INFECTIOUS DISEASES

Broad and differential animal ACE2 receptor usage by SARS-CoV-2

(2020) Xuesen Zhao et al.   JOURNAL OF VIROLOGY

Adaptation of SARS-CoV-2 in BALB/c mice for testing vaccine efficacy

(2020) Hongjing Gu et al.   SCIENCE

Clinical and laboratory evaluation of SARS-CoV-2 lateral flow assays for use in a national COVID-19 seroprevalence survey

(2020) Barnaby Flower et al.   THORAX

Self-amplifying RNA SARS-CoV-2 lipid nanoparticle vaccine candidate induces high neutralizing antibody titers in mice

(2020) Paul F. McKay et al.   Nature Communications

SARS-CoV-2 is transmitted via contact and via the air between ferrets

(2020) Mathilde Richard et al.   Nature Communications

Characterisation of the transcriptome and proteome of SARS-CoV-2 reveals a cell passage induced in-frame deletion of the furin-like cleavage site from the spike glycoprotein

(2020) Andrew D. Davidson et al.   Genome Medicine

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

Micro-fusion inhibition tests: quantifying antibody neutralization of virus-mediated cell–cell fusion

(2020) Nazia Thakur et al.   JOURNAL OF GENERAL VIROLOGY

Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion

(2020) Donald J. Benton et al.   NATURE

The SARS-CoV-2 Spike protein has a broad tropism for mammalian ACE2 proteins

(2020) Carina Conceicao et al.   PLOS BIOLOGY

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

(2020) Ana da Silva Filipe et al.   Nature Microbiology

Possible host-adaptation of SARS-CoV-2 due to improved ACE2 receptor binding in mink

(2020) Matthijs R A Welkers et al.   Virus Evolution

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Generation of a dual-functional split-reporter protein for monitoring membrane fusion using self-associating split GFP

(2012) H. Ishikawa et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Cloning of the Repertoire of Individual Plasmodium falciparum var Genes Using Transformation Associated Recombination (TAR)

(2011) Annette Gaida et al.   PLoS One

Hemagglutinin Receptor Binding Avidity Drives Influenza A Virus Antigenic Drift

(2009) S. E. Hensley et al.   SCIENCE