Development and validation of a high throughput SARS-CoV-2 whole genome sequencing workflow in a clinical laboratory
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Development and validation of a high throughput SARS-CoV-2 whole genome sequencing workflow in a clinical laboratory
Authors
Keywords
-
Journal
Scientific Reports
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-02-08
DOI
10.1038/s41598-022-06091-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing
- (2021) Rahul C. Bhoyar et al. PLoS One
- Novel SARS-CoV-2 variants: the pandemics within the pandemic
- (2021) Erik Boehm et al. CLINICAL MICROBIOLOGY AND INFECTION
- Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection Clusters Based on Integrated Genomic Surveillance, Outbreak Analysis and Contact Tracing in an Urban Setting
- (2021) Andreas Walker et al. CLINICAL INFECTIOUS DISEASES
- Whole Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina-MiSeq ARTIC Protocol
- (2021) Jonathan Plitnick et al. JOURNAL OF CLINICAL MICROBIOLOGY
- The impact of real-time whole genome sequencing in controlling healthcare-associated SARS-CoV-2 outbreaks
- (2021) Rodric V Francis et al. JOURNAL OF INFECTIOUS DISEASES
- The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology
- (2021) Bas B. Oude Munnink et al. NATURE MEDICINE
- SARS-CoV-2 variants, spike mutations and immune escape
- (2021) William T. Harvey et al. NATURE REVIEWS MICROBIOLOGY
- Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals
- (2021) Harsha Doddapaneni et al. PLoS One
- COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance
- (2021) Michele Simonetti et al. Nature Communications
- High-precision and cost-efficient sequencing for real-time COVID-19 surveillance
- (2021) Sung Yong Park et al. Scientific Reports
- An implementation science approach to evaluating pathogen whole genome sequencing in public health
- (2021) Angeline S. Ferdinand et al. Genome Medicine
- Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding
- (2020) Roujian Lu et al. LANCET
- A new coronavirus associated with human respiratory disease in China
- (2020) Fan Wu et al. NATURE
- A pneumonia outbreak associated with a new coronavirus of probable bat origin
- (2020) Peng Zhou et al. NATURE
- A Novel Coronavirus from Patients with Pneumonia in China, 2019
- (2020) Na Zhu et al. NEW ENGLAND JOURNAL OF MEDICINE
- Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
- (2020) Minfeng Xiao et al. Genome Medicine
- Disentangling primer interactions improves SARS-CoV-2 genome sequencing by multiplex tiling PCR
- (2020) Kentaro Itokawa et al. PLoS One
- A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture
- (2020) Jalees A. Nasir et al. Viruses-Basel
- Rapid genomic characterization of SARS-CoV-2 viruses from clinical specimens using nanopore sequencing
- (2020) Jun Li et al. Scientific Reports
- Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation
- (2020) Caroline Charre et al. Virus Evolution
- A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2
- (2020) Daryl M. Gohl et al. BMC GENOMICS
- Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities
- (2020) Matteo Chiara et al. BRIEFINGS IN BIOINFORMATICS
- Unraveling the Zoonotic Origin and Transmission of SARS-CoV-2
- (2020) Arinjay Banerjee et al. TRENDS IN ECOLOGY & EVOLUTION
- Shotgun metagenomics, from sampling to analysis
- (2017) Christopher Quince et al. NATURE BIOTECHNOLOGY
- Selected insights from application of whole-genome sequencing for outbreak investigations
- (2013) Vien Thi Minh Le et al. Current Opinion in Critical Care
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now