Evidence for Horizontal and Vertical Transmission of Mtr-Mediated Extracellular Electron Transfer among the Bacteria

Microbe-Mineral Interaction and Novel Proteins for Iron Oxide Mineral Reduction in the Hyperthermophilic Crenarchaeon Pyrodictium delaneyi

(2021) Srishti Kashyap et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An evolving view on biogeochemical cycling of iron

(2021) Andreas Kappler et al.   NATURE REVIEWS MICROBIOLOGY

Examining horizontal gene transfer in microbial communities

(2021) Ilana Lauren Brito   NATURE REVIEWS MICROBIOLOGY

Long-distance electron transfer in a filamentous Gram-positive bacterium

(2021) Yonggang Yang et al.   Nature Communications

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies

(2020) Arkadiy I. Garber et al.   Frontiers in Microbiology

Rates and Microbial Players of Iron-Driven Anaerobic Oxidation of Methane in Methanic Marine Sediments

(2020) David A. Aromokeye et al.   Frontiers in Microbiology

The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire

(2020) Marcus J. Edwards et al.   CELL

A hybrid extracellular electron transfer pathway enhances survival of Vibrio natriegens

(2020) Bridget E. Conley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial chemolithoautotrophy via manganese oxidation

(2020) Hang Yu et al.   NATURE

Outer membrane c-type cytochromes OmcA and MtrC play distinct roles in enhancing the attachment of Shewanella oneidensis MR-1 cells to goethite

(2020) Xinxin Jing et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Extracellular electron uptake by autotrophic microbes: physiological, ecological, and evolutionary implications

(2020) Dinesh Gupta et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Microfluidic dielectrophoresis illuminates the relationship between microbial cell envelope polarizability and electrochemical activity

(2019) Qianru Wang et al.   Science Advances

Gene duplication and deletion, not horizontal transfer, drove intra-species mosaicism of Bartonella henselae

(2019) Rachana Banerjee et al.   GENOMICS

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

The Biogeochemical Sulfur Cycle of Marine Sediments

(2019) Bo Barker Jørgensen et al.   Frontiers in Microbiology

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Anoxygenic photosynthesis and the delayed oxygenation of Earth’s atmosphere

(2019) Kazumi Ozaki et al.   Nature Communications

Whole-Genome Sequencing Redefines Shewanella Taxonomy

(2019) Kaisa Thorell et al.   Frontiers in Microbiology

CDD/SPARCLE: the conserved domain database in 2020

(2019) Shennan Lu et al.   NUCLEIC ACIDS RESEARCH

Photoferrotrophs Produce a PioAB Electron Conduit for Extracellular Electron Uptake

(2019) Dinesh Gupta et al.   mBio

Photoferrotrophy, deposition of banded iron formations, and methane production in Archean oceans

(2019) Katharine J. Thompson et al.   Science Advances

Pan-genome analyses of 24 Shewanella strains re-emphasize the diversification of their functions yet evolutionary dynamics of metal-reducing pathway

(2018) Chaofang Zhong et al.   Biotechnology for Biofuels

A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction

(2018) Chen Cai et al.   ISME Journal

Extracellular reduction of solid electron acceptors by Shewanella oneidensis

(2018) Sebastian Beblawy et al.   MOLECULAR MICROBIOLOGY

Tracking Electron Uptake from a Cathode into Shewanella Cells: Implications for Energy Acquisition from Solid-Substrate Electron Donors

(2018) Annette R. Rowe et al.   mBio

The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans

(2018) Benjamin J. Tully et al.   Scientific Data

Divergent Nrf-family proteins and MtrCAB homologs facilitate extracellular electron transfer in Aeromonas hydrophila

(2018) Bridget E. Conley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Extracellular Electron Transfer via Outer Membrane Cytochromes in a Methanotrophic Bacterium Methylococcus capsulatus (Bath)

(2018) Kenya Tanaka et al.   Frontiers in Microbiology

Genomic Analyses of the Quinol Oxidases and/or Quinone Reductases Involved in Bacterial Extracellular Electron Transfer

(2018) Yuhong Zhong et al.   Frontiers in Microbiology

Development of a Genetic System for Marinobacter atlanticus CP1 (sp. nov.), a Wax Ester Producing Strain Isolated From an Autotrophic Biocathode

(2018) Lina J. Bird et al.   Frontiers in Microbiology

Characterization of OmcA Mutants from Shewanella oneidensis MR-1 to Investigate the Molecular Mechanisms Underpinning Electron Transfer Across the Microbe-Electrode Interface

(2017) S. E. Neto et al.   Fuel Cells

Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product

(2017) Harry A. Dailey et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Photoferrotrophy: Remains of an Ancient Photosynthesis in Modern Environments

(2017) Antonio Camacho et al.   Frontiers in Microbiology

Comparative Genomic Analysis of Neutrophilic Iron(II) Oxidizer Genomes for Candidate Genes in Extracellular Electron Transfer

(2017) Shaomei He et al.   Frontiers in Microbiology

Metatranscriptomics Supports the Mechanism for Biocathode Electroautotrophy by “ Candidatus Tenderia electrophaga”

(2017) Brian J. Eddie et al.   mSystems

Physiological and transcriptional approaches reveal connection between nitrogen and manganese cycles in Shewanella algae C6G3

(2017) Axel Aigle et al.   Scientific Reports

Anaerobic oxidation of methane coupled with extracellular electron transfer to electrodes

(2017) Yaohuan Gao et al.   Scientific Reports

The Role of Microbial Electron Transfer in the Coevolution of the Biosphere and Geosphere

(2016) Benjamin I. Jelen et al.   Annual Review of Microbiology

Metagenomic Analyses of the Autotrophic Fe(II)-Oxidizing, Nitrate-Reducing Enrichment Culture KS

(2016) Shaomei He et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of Gene Expression in Shewanella oneidensis MR-1 during Electron Acceptor Limitation and Bacterial Nanowire Formation

(2016) Sarah E. Barchinger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

‘Candidatus Tenderia electrophaga', an uncultivated electroautotroph from a biocathode enrichment

(2016) Brian J. Eddie et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Timetree of Prokaryotes: New Insights into Their Evolution and Speciation

(2016) Julie Marin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution by gene loss

(2016) Ricard Albalat et al.   NATURE REVIEWS GENETICS

Extracellular electron transfer mechanisms between microorganisms and minerals

(2016) Liang Shi et al.   NATURE REVIEWS MICROBIOLOGY

Archaea catalyze iron-dependent anaerobic oxidation of methane

(2016) Katharina F. Ettwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer

(2015) Ryan A. Melnyk et al.   BMC GENOMICS

Transcriptional mechanisms for differential expression of outer membrane cytochrome genes omcA and mtrC in Shewanella oneidensis MR-1

(2015) Takuya Kasai et al.   BMC MICROBIOLOGY

A dynamic periplasmic electron transfer network enables respiratory flexibility beyond a thermodynamic regulatory regime

(2015) Gunnar Sturm et al.   ISME Journal

Metaproteomic evidence of changes in protein expression following a change in electrode potential in a robust biocathode microbiome

(2015) Dagmar H. Leary et al.   PROTEOMICS

Synthetic and Evolutionary Construction of a Chlorate-Reducing Shewanella oneidensis MR-1

(2015) Iain C. Clark et al.   mBio

Inferring Horizontal Gene Transfer

(2015) Matt Ravenhall et al.   PLoS Computational Biology

Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth

(2015) Christopher R. Beckwith et al.   Frontiers in Microbiology

A Previously Uncharacterized, Nonphotosynthetic Member of the Chromatiaceae Is the Primary CO2-Fixing Constituent in a Self-Regenerating Biocathode

(2014) Zheng Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface

(2014) Marcus J. Edwards et al.   FEBS LETTERS

Isolation ofSphaerotilus-Leptothrixstrains from iron bacteria communities in Tierra del Fuego wetlands

(2014) Bertram Schmidt et al.   FEMS MICROBIOLOGY ECOLOGY

Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria

(2014) Alejandro Caro-Quintero et al.   ISME Journal

Bacterial Genome Instability

(2014) E. Darmon et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Cable bacteria associated with long-distance electron transport in New England salt marsh sediment

(2014) Steffen Larsen et al.   Environmental Microbiology Reports

Electron uptake by iron-oxidizing phototrophic bacteria

(2014) A. Bose et al.   Nature Communications

The Genomic Landscape of Compensatory Evolution

(2014) Béla Szamecz et al.   PLOS BIOLOGY

Roles of UndA and MtrC of Shewanella putrefaciens W3-18-1 in iron reduction

(2013) Yunfeng Yang et al.   BMC MICROBIOLOGY

Nitrate and periplasmic nitrate reductases

(2013) Courtney Sparacino-Watkins et al.   CHEMICAL SOCIETY REVIEWS

Unique Organizational and Functional Features of the Cytochrome c Maturation System in Shewanella oneidensis

(2013) Miao Jin et al.   PLoS One

Structure and Evolution of Chlorate Reduction Composite Transposons

(2013) I. C. Clark et al.   mBio

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

(2013) David Emerson et al.   Frontiers in Microbiology

A functional description of CymA, an electron-transfer hub supporting anaerobic respiratory flexibility inShewanella

(2012) Sophie J. Marritt et al.   BIOCHEMICAL JOURNAL

Mind the gap: cytochrome interactions reveal electron pathways across the periplasm ofShewanella oneidensisMR-1

(2012) Bruno M. Fonseca et al.   BIOCHEMICAL JOURNAL

Analysis of structural MtrC models based on homology with the crystal structure of MtrF

(2012) Marcus J. Edwards et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Mind the gap: diversity and reactivity relationships among multihaem cytochromes of the MtrA/DmsE family

(2012) Kathryn D. Bewley et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Mtr extracellular electron-transfer pathways in Fe(III)-reducing or Fe(II)-oxidizing bacteria: a genomic perspective

(2012) Liang Shi et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism

(2012) Fabian Grein et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Role of outer membrane c-type cytochromes MtrC and OmcA in Shewanella oneidensis MR-1 cell production, accumulation, and detachment during respiration on hematite

(2012) A. C. MITCHELL et al.   Geobiology

Characterization of Axial and Proximal Histidine Mutations of the Decaheme Cytochrome MtrA from Shewanella sp. Strain ANA-3 and Implications for the Electron Transport System

(2012) C. Reyes et al.   JOURNAL OF BACTERIOLOGY

Outer-membrane cytochrome-independent reduction of extracellular electron acceptors in Shewanella oneidensis

(2012) C. Bucking et al.   MICROBIOLOGY-SGM

The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates

(2012) Marcus J. Edwards et al.   STRUCTURE

Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1

(2012) Juan Liu et al.   Frontiers in Microbiology

Global Biogeography and Quantitative Seasonal Dynamics of Gemmatimonadetes in Soil

(2011) Jennifer M. DeBruyn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Live wires: direct extracellular electron exchange for bioenergy and the bioremediation of energy-related contamination

(2011) Derek R. Lovley   Energy & Environmental Science

Ecology drives a global network of gene exchange connecting the human microbiome

(2011) Chris S. Smillie et al.   NATURE

Towards Electrosynthesis in Shewanella: Energetics of Reversing the Mtr Pathway for Reductive Metabolism

(2011) Daniel E. Ross et al.   PLoS One

Structure of a bacterial cell surface decaheme electron conduit

(2011) T. A. Clarke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Loss of Genetic Redundancy in Reductive Genome Evolution

(2011) André G. Mendonça et al.   PLoS Computational Biology

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes

(2010) Jessica E Butler et al.   BMC GENOMICS

Phylogeny of Gammaproteobacteria

(2010) K. P. Williams et al.   JOURNAL OF BACTERIOLOGY

Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments

(2010) Eiji Aono et al.   Molecular BioSystems

Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR-1

(2010) Dan Coursolle et al.   MOLECULAR MICROBIOLOGY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Kinetic Characterization of OmcA and MtrC, Terminal Reductases Involved in Respiratory Electron Transfer for Dissimilatory Iron Reduction in Shewanella oneidensis MR-1

(2009) D. E. Ross et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes

(2009) Aditi Kanhere et al.   BMC EVOLUTIONARY BIOLOGY

Microbial Reduction of Intragrain U(VI) in Contaminated Sediment

(2009) Chongxuan Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria

(2009) B. Gao et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial gene amplification: implications for the evolution of antibiotic resistance

(2009) Linus Sandegren et al.   NATURE REVIEWS MICROBIOLOGY

CcsBA is a cytochrome c synthetase that also functions in heme transport

(2009) E. R. Frawley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative systems biology across an evolutionary gradient within the Shewanella genus

(2009) K. T. Konstantinidis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of an electron conduit between bacteria and the extracellular environment

(2009) Robert S. Hartshorne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The biochemistry of heme biosynthesis

(2008) Ilka U. Heinemann et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1

(2008) J. S. McLean et al.   ENVIRONMENTAL MICROBIOLOGY

In Vitro Evolution of a Peptide with a Hematite Binding Motif That May Constitute a Natural Metal-Oxide Binding Archetype

(2008) Brian H. Lower et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Electrochemical interrogations of the Mtr cytochromes from Shewanella: opening a potential window

(2008) Mackenzie Firer-Sherwood et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Towards environmental systems biology of Shewanella

(2008) James K. Fredrickson et al.   NATURE REVIEWS MICROBIOLOGY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE