Virome Analysis of Signal Crayfish (Pacifastacus leniusculus) along Its Invasion Range Reveals Diverse and Divergent RNA Viruses

Diversity and classification of reoviruses in crustaceans: A proposal

(2021) Mingli Zhao et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Tracing the origin of the crayfish plague pathogen, Aphanomyces astaci, to the Southeastern United States

(2021) Laura Martín-Torrijos et al.   Scientific Reports

Humane Slaughter of Edible Decapod Crustaceans

(2021) Francesca Conte et al.   Animals

Disturbance in invasion? Idiopathic necrotizing hepatopancreatitis in the signal crayfish Pacifastacus leniusculus (Dana, 1852) in Croatia

(2021) Ana Bekavac et al.   JOURNAL OF FISH DISEASES

Correction: Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes

(2020) Fergal M. Waldron et al.   PLoS Genetics

Identification of Reptarenaviruses, Hartmaniviruses, and a Novel Chuvirus in Captive Native Brazilian Boa Constrictors with Boid Inclusion Body Disease

(2020) Fernando Froner Argenta et al.   JOURNAL OF VIROLOGY

A Novel Hepe-Like Virus from Farmed Giant Freshwater Prawn Macrobrachium rosenbergii

(2020) Xuan Dong et al.   Viruses-Basel

Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome

(2020) Yuri I. Wolf et al.   Nature Microbiology

Abundant and Diverse RNA Viruses in Insects Revealed by RNA-Seq Analysis: Ecological and Evolutionary Implications

(2020) Haoming Wu et al.   mSystems

In and Outs of Chuviridae Endogenous Viral Elements: Origin of a Potentially New Retrovirus and Signature of Ancient and Ongoing Arms Race in Mosquito Genomes

(2020) Filipe Zimmer Dezordi et al.   Frontiers in Genetics

Reverse transcription polymerase chain reaction (RT-PCR) detection for Australian Cherax reovirus from redclaw crayfish (Cherax quadricarinatus)

(2020) Orachun Hayakijkosol et al.   AQUACULTURE

Microbial pathogens of freshwater crayfish: A critical review and systematization of the existing data with directions for future research

(2020) Paula Dragičević et al.   JOURNAL OF FISH DISEASES

Cryo-EM structures of novel viruses from mud crab Scylla Paramamosain with multiple infections

(2019) Yuanzhu Gao et al.   JOURNAL OF VIROLOGY

A new bunya-like virus associated with mass mortality of white-clawed crayfish in the wild

(2019) Frederic Grandjean et al.   VIROLOGY

Using Metagenomics to Characterize an Expanding Virosphere

(2018) Yong-Zhen Zhang et al.   CELL

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer

(2018) Valerian V. Dolja et al.   VIRUS RESEARCH

Non-random dispersal mediates invader impacts on the invertebrate community

(2017) Julien Cote et al.   JOURNAL OF ANIMAL ECOLOGY

A taxonomic review of viruses infecting crustaceans with an emphasis on wild hosts

(2017) K.S. Bateman et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing

(2017) Chenxi Xu et al.   JOURNAL OF VIROLOGY

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data: Table 1.

(2015) Chase W. Nelson et al.   BIOINFORMATICS

Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea)

(2015) N. I. Richman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Virus genomes and virus-host interactions in aquaculture animals

(2015) QiYa Zhang et al.   Science China-Life Sciences

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

(2015) Ci-Xiu Li et al.   eLife

Environmental and economic impact assessment of alien and invasive fish species in Europe using the generic impact scoring system

(2014) Gabriel van der Veer et al.   ECOLOGY OF FRESHWATER FISH

Continental-wide distribution of crayfish species in Europe: update and maps

(2014) A. Kouba et al.   Knowledge and Management of Aquatic Ecosystems

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Parasite and viral species richness of Southeast Asian bats: Fragmentation of area distribution matters

(2014) Noellie Gay et al.   International Journal for Parasitology-Parasites and Wildlife

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome Analysis of Pacific White Shrimp (Litopenaeus vannamei) Hepatopancreas in Response to Taura Syndrome Virus (TSV) Experimental Infection

(2013) Digang Zeng et al.   PLoS One

A global meta-analysis of the ecological impacts of nonnative crayfish

(2013) Laura A. Twardochleb et al.   Freshwater Science

Global Introductions of Crayfishes: Evaluating the Impact of Species Invasions on Ecosystem Services

(2012) David M. Lodge et al.   Annual Review of Ecology Evolution and Systematics

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Pathogenicity and complete genome sequence analysis of the mud crab dicistrovirus-1

(2012) Zhi-Xun Guo et al.   VIRUS RESEARCH

Investigation into the pathogenicity of reovirus to juvenile Cherax quadricarinatus

(2011) Orachun Hayakijkosol et al.   AQUACULTURE

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

(2011) R. Sanchez et al.   NUCLEIC ACIDS RESEARCH

Cross-Species Pathogen Transmission and Disease Emergence in Primates

(2010) Amy B. Pedersen et al.   EcoHealth

A review of the ever increasing threat to European crayfish from non-indigenous crayfish species

(2010) D.M. Holdich et al.   Knowledge and Management of Aquatic Ecosystems

Distribution and dispersal of two invasive crayfish species in the Drava River basin, Croatia

(2010) S. Hudina et al.   Knowledge and Management of Aquatic Ecosystems

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

White spot syndrome virus: an overview on an emergent concern

(2010) Arturo Sánchez-Paz   VETERINARY RESEARCH

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The spread of invasive species and infectious disease as drivers of ecosystem change

(2008) Todd A Crowl et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT