Different spatiotemporal dynamics, ecological drivers and assembly processes of bacterial, archaeal and fungal communities in brackish-saline groundwater

Hydrochemistry and nutrients determined the distribution of greenhouse gases in saline groundwater

(2021) Jiarui Li et al.   ENVIRONMENTAL POLLUTION

Planktonic microbial responses to perfluorinated compound (PFC) pollution: Integrating PFC distributions with community coalescence and metabolism

(2021) Jian-yi Wu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater

(2021) Maliheh Mehrshad et al.   Nature Communications

Diversity, ecology and evolution of Archaea

(2020) Brett J. Baker et al.   Nature Microbiology

Spatiotemporal distribution, risk assessment and source appointment of metal(loid)s in water and sediments of Danjiangkou Reservoir, China

(2020) Tong Zheng et al.   ENVIRONMENTAL GEOCHEMISTRY AND HEALTH

Fungal endophytes alleviate salt stress in wheat in terms of growth, ion homeostasis and osmoregulation

(2020) Mohammed Bouzouina et al.   JOURNAL OF APPLIED MICROBIOLOGY

Transient Dynamics of Archaea and Bacteria in Sediments and Brine Across a Salinity Gradient in a Solar Saltern of Goa, India

(2020) Kabilan Mani et al.   Frontiers in Microbiology

Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

(2020) Franziska Wemheuer et al.   Environmental Microbiome

Comparison of the groundwater microbial community in a salt-freshwater mixing zone during the dry and wet seasons

(2020) Lin Chen et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Groundwater salinization and flushing during glacial‐interglacial cycles: insights from aquitard porewater tracer profiles in the North China Plain, China

(2020) Dongmei Han et al.   WATER RESOURCES RESEARCH

Salinity effect on freshwater Anammox bacteria: Ionic stress and ion composition

(2020) Limin Lin et al.   WATER RESEARCH

Use and abuse of correlation analyses in microbial ecology

(2019) Alex Carr et al.   ISME Journal

The Study of Hydrogeochemical Environments and Microbial Communities along a Groundwater Salinity Gradient in the Pearl River Delta, China

(2019) Shilei Sang et al.   Water

A general framework for quantitatively assessing ecological stochasticity

(2019) Daliang Ning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterizing microbial diversity and community composition of groundwater in a salt-freshwater transition zone

(2019) Lin Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Anaerobic ammonium oxidation is a major N-sink in aquifer systems around the world

(2019) Shanyun Wang et al.   ISME Journal

Exploring the accuracy of amplicon‐based internal transcribed spacer markers for a fungal community

(2019) Shuzhen Li et al.   Molecular Ecology Resources

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

Identifying ecological processes driving vertical and horizontal archaeal community assemblages in a contaminated urban river

(2019) Mengting Lei et al.   CHEMOSPHERE

OUP accepted manuscript

(2018)   BIOINFORMATICS

Salt-adapted moulds and yeasts: Potentials in industrial and environmental biotechnology

(2018) Haliru Musa et al.   PROCESS BIOCHEMISTRY

Elucidating the stimulatory and inhibitory effects of dissolved sulfide on sulfur-oxidizing bacteria (SOB) driven autotrophic denitrification

(2018) Hui Lu et al.   WATER RESEARCH

Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

(2018) Tang Liu et al.   Microbiome

Effects of salinity on nitrification efficiency and bacterial community structure in a nitrifying osmotic membrane bioreactor

(2018) Dawoon Jeong et al.   PROCESS BIOCHEMISTRY

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Diversity and predictive metabolic pathways of the prokaryotic microbial community along a groundwater salinity gradient of the Pearl River Delta, China

(2018) Shilei Sang et al.   Scientific Reports

Taxonomy, phylogeny and ecology of cultivable fungi present in seawater gradients across the Northern Antarctica Peninsula

(2017) Vívian N. Gonçalves et al.   EXTREMOPHILES

Habitat-specific patterns and drivers of bacterial β-diversity in China’s drylands

(2017) Xiao-Bo Wang et al.   ISME Journal

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Effects of Physiochemical Factors on Prokaryotic Biodiversity in Malaysian Circumneutral Hot Springs

(2017) Chia S. Chan et al.   Frontiers in Microbiology

Exploration of the relationship between biogas production and microbial community under high salinity conditions

(2017) Shaojie Wang et al.   Scientific Reports

Groundwater salinization in shallow aquifers adjacent to a low-altitude inland salt lake: a case study at Yuncheng Basin, northern China

(2016) Chengcheng Li et al.   Environmental Earth Sciences

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Influence of seawater intrusion on microbial communities in groundwater

(2015) Tatsuya Unno et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Source, transport, and evolution of saline groundwater in a shallow Holocene aquifer on the tidal deltaplain of southwest Bangladesh

(2015) Scott C. Worland et al.   WATER RESOURCES RESEARCH

Current developments in groundwater ecology—from biodiversity to ecosystem function and services

(2014) Christian Griebler et al.   CURRENT OPINION IN BIOTECHNOLOGY

Diversity and geochemical structuring of bacterial communities along a salinity gradient in a carbonate aquifer subject to seawater intrusion

(2014) Marina Héry et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity and Saline Resistance of Endophytic Fungi Associated with Pinus thunbergii in Coastal Shelterbelts of Korea

(2014) Young Ju Min et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Influence of south-to-north water diversion on major cones of depression in North China Plain

(2013) Yuan Zhang et al.   Environmental Earth Sciences

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples

(2012) Ana C. C. Pires et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Predicting bacterial community assemblages using an artificial neural network approach

(2012) Peter E Larsen et al.   NATURE METHODS

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Controls on the δ34S and δ18O of dissolved sulfate in the Quaternary aquifers of the North China Plain

(2011) Xiaoqian Li et al.   JOURNAL OF HYDROLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences